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Table 6 Primers used in the qRT-PCR experiment

From: Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

Primer name

Sequence

Efficiency (%)

R2

ALF1-F

5′-CTG GTG ACG GAA GAA GAA GC-3′

98.13

0.9975

ALF1-R

5′–CTT AAC CAG GCC ATT CCT CA–3’

  

Spz-F

5′-CGA CGGA ATA CCC GAC CTA CA-3’

92.27

0.9926

Spz-R

5′-TGT CGG TTT TGC AGA CGT AG-3’

  

CuZnSOD3-F

5′-GGG AGA CCT AGG GAA CAT CC-3’

95.33

0.9920

CuZnSOD3-R

5′-GTG GAT GAC CAC GGC TCT AT-3’

  

CASP-F

5′-CTG CCC TGA ATT CCT CTC TG-3’

105.24

0.9885

CASP-R

5′-CGA AGG TGG TAT GGA GCA AT-3’

  

Anv-F

5′-AAT GGT GGT ATC AGC CTT GC-3’

94.53

0.9885

Anv-R

5′-TTA GAG GGT CGA CCA TGA GG-3’

  

DICER-F

5′-CAC TCG AGC ATC CTG TTT CA-3’

107.80

0.9969

DICER-R

5′-ACC AAT CCC CAT CCA ATG TA-3’

  

HMCN1-F

5′-TAA GGC AAC CGA CCA CTA CC-3’

107.85

0.9940

HMCN1-R

5′-GAC GTA GAG ACT GGC GGA AG-3’

  

ARF-F

5′-CCC ATT ACA GTG GTC CTG CT-3’

95.22

0.9928

ARF-R

5′-CAG AAC CCT TCC CTT CAC AA-3’

  

ProPO-F

5′-AAC AAC CTG AGA ACC GGA TG-3’

93.46

0.9899

ProPO-R

5′-CGG CAG GGT TGG CAT AAT CT-3’

  

EF1a-F

5′-TGC GCT GTG TTG ATT GTA GC-3’

103.19

0.9834

EF1a-R

5′-ACA ATG AGC TGC TTG ACA CC-3’

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