Whole-genome DNA similarity and population structure of Plasmodiophora brassicae strains from Canada

BMC Genomics

Table 1 Origin, names, pathotype (Williams’s system) and source of field collections and single-spore isolates (SS) of Plasmodiophora brassicae used for whole-genome sequencing

Origin	Name	Year	Original designation	Source and Reference
Canada
BC	BC1-ss2-P6		AbotJE	Napa cabbage [57]
BC	BC2-ss4-P6		AbotJE	Napa cabbage [57]
BC	BC3-P6		AbotJE-04-01	Napa cabbage [57]
BC	BC4-P6	2015	P6	Brussels sprouts
BC	BC5-P6	2017	P6	Cauliflower
AB	AB1-ss1-P3		SACAN	Canola [57]
AB	AB2-ss2-P3		SACAN	Canola [57]
AB	AB3-ss3-P2		SACAN	Canola [57]
AB	AB4-ss4-P3		SACAN	Canola [57]
AB	AB6-ss1-P8		CDCN	Canola [57]
AB	AB7		CDCN-04-01	Canola [57]
AB	AB8-P2	2005	F.1–05	Canola [58]
AB	AB9	2005	F.290–07	Canola [59]
AB	AB10-P3	2017	P3	Canola
AB	AB11-P3		Deora	Canola [60]
AB	AB12-P5		Deora	Canola [60]
AB	AB13-P5X		LG1	Canola [61]
AB	AB14-P5X		LG3	Canola [61]
AB	AB15-P3		SCAN.03.01	Canola [57]
SK	SK1-P3	2017	Aug25	Canola
SK	SK2	2017	CD1A	Canola
SK	SK3	2017	Sep 21	Canola
MB	MB	2017		Canola
ON, Orton	ON1-ss2-P8		ORCA	Cabbage [57]
ON, Orton	ON2-ss3-P5		ORCA	Cabbage [57]
ON, Orton	ON3		ORCA-04-01	Cabbage [57]
ON, MCRS	ON4-P6	2016	P6	Canola [39]
ON, MCRS	ON5-P2	2017	P2	Canola [39]
ON, MCRS	ON6-P6	2011	P6	Canola [39]
ON, Verner	ON7-P2		P2	Bok choi [18]
QC, Normandin	QC1-P5X	2017	P5X	Canola [39]
QC, Normandin	QC2-P2	2012	P2	Canola [59]
PEI	PEI1-P5	2017	P5	Canola
NF	NF1	2016	DD1	Vegetable
NF	NF2-P1	2016	DD2A	Vegetable
USA
ND	ND1-P8		NDCR1
ND	ND2-P8		NDCR4
China (CH)
Jiangsu, Ganyu	CH1-P1		4	Gailan
Yunnan, Muding	CH2		8	Chinese cabbage
Yunnan, Muding	CH3		11	Chinese cabbage
Yunnan, Lufong	CH4		12	Cabbage
Hebei, Kuyuang	CH5		28	Broccoli

BC British Colombia, AB Alberta, SK Saskatchewan, MB Manitoba, ON Ontario, QC Quebec, NF Newfoundland, PEI Prince Edward Island, ND North Dakota, CH China, MCRS Muck Crops Research Station

ISSN: 1471-2164