RNA-Seq based transcriptome analysis during bovine viral diarrhoea virus (BVDV) infection

BMC Genomics

Table 1 Summary statistics for sequence quality control and mapped data of samples

Sample	Raw reads	Raw bases	Clean reads	Clean bases	Error rate(%)	Q30(%)	GC content(%)	Total mapped	Multiple mapped	Uniquely mapped
Mock1	59,871,314	9.04E+ 09	58,364,222	8.64E+ 09	0.0127	94.47	54.69	56,091,717	2,022,528	54,069,189
Mock2	62,652,690	9.46E+ 09	61,106,134	9.05E+ 09	0.0127	94.46	54.84	58,825,929	1,973,290	56,852,639
Mock3	62,037,832	9.37E+ 09	60,491,658	8.96E+ 09	0.0127	94.46	54.75	58,228,017	1,853,339	56,374,678
MBV2h1	59,861,152	9.04E+ 09	59,295,566	8.86E+ 09	0.0232	95.94	54.73	57,077,611	2,775,919	54,301,692
MBV2h2	57,685,384	8.71E+ 09	57,103,346	8.53E+ 09	0.0231	96.11	54.82	54,969,915	2,673,949	52,295,966
MBV2h3	55,726,700	8.41E+ 09	55,147,954	8.24E+ 09	0.0231	96.02	55	53,040,252	2,267,352	50,772,900
MBV6h1	61,244,856	9.25E+ 09	60,686,854	9.06E+ 09	0.0227	96.53	55.32	58,408,773	2,607,450	55,801,323
MBV6h2	56,301,976	8.5E+ 09	55,767,750	8.34E+ 09	0.023	96.22	54.82	53,609,101	2,131,215	51,477,886
MBV6h3	61,993,652	9.36E+ 09	61,351,120	9.16E+ 09	0.0234	95.78	54.81	58,953,749	2,347,841	56,605,908
MBV12h1	55,707,520	8.41E+ 09	55,210,364	8.25E+ 09	0.023	96.23	54.48	53,122,918	2,080,378	51,042,540
MBV12h2	55,239,962	8.34E+ 09	54,712,404	8.18E+ 09	0.023	96.18	54.84	52,508,770	2,092,552	50,416,218
MBV12h3	57,751,894	8.72E+ 09	57,242,562	8.56E+ 09	0.0228	96.39	54.71	54,983,532	3,032,684	51,950,848
MBV24h1	61,825,850	9.34E+ 09	60,299,100	8.93E+ 09	0.0127	94.49	54.58	58,047,262	2,112,347	55,934,915
MBV24h2	59,229,538	8.94E+ 09	57,746,066	8.56E+ 09	0.0128	94.36	54.43	55,605,127	1,780,562	53,824,565
MBV24h3	58,448,052	8.83E+ 09	57,040,466	8.45E+ 09	0.0126	94.56	54.3	54,944,177	1,642,785	53,301,392

ISSN: 1471-2164