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Table 1 Summary statistics for sequence quality control and mapped data of samples

From: RNA-Seq based transcriptome analysis during bovine viral diarrhoea virus (BVDV) infection

Sample Raw reads Raw bases Clean reads Clean bases Error rate(%) Q30(%) GC content(%) Total mapped Multiple mapped Uniquely mapped
Mock1 59,871,314 9.04E+ 09 58,364,222 8.64E+ 09 0.0127 94.47 54.69 56,091,717 2,022,528 54,069,189
Mock2 62,652,690 9.46E+ 09 61,106,134 9.05E+ 09 0.0127 94.46 54.84 58,825,929 1,973,290 56,852,639
Mock3 62,037,832 9.37E+ 09 60,491,658 8.96E+ 09 0.0127 94.46 54.75 58,228,017 1,853,339 56,374,678
MBV2h1 59,861,152 9.04E+ 09 59,295,566 8.86E+ 09 0.0232 95.94 54.73 57,077,611 2,775,919 54,301,692
MBV2h2 57,685,384 8.71E+ 09 57,103,346 8.53E+ 09 0.0231 96.11 54.82 54,969,915 2,673,949 52,295,966
MBV2h3 55,726,700 8.41E+ 09 55,147,954 8.24E+ 09 0.0231 96.02 55 53,040,252 2,267,352 50,772,900
MBV6h1 61,244,856 9.25E+ 09 60,686,854 9.06E+ 09 0.0227 96.53 55.32 58,408,773 2,607,450 55,801,323
MBV6h2 56,301,976 8.5E+ 09 55,767,750 8.34E+ 09 0.023 96.22 54.82 53,609,101 2,131,215 51,477,886
MBV6h3 61,993,652 9.36E+ 09 61,351,120 9.16E+ 09 0.0234 95.78 54.81 58,953,749 2,347,841 56,605,908
MBV12h1 55,707,520 8.41E+ 09 55,210,364 8.25E+ 09 0.023 96.23 54.48 53,122,918 2,080,378 51,042,540
MBV12h2 55,239,962 8.34E+ 09 54,712,404 8.18E+ 09 0.023 96.18 54.84 52,508,770 2,092,552 50,416,218
MBV12h3 57,751,894 8.72E+ 09 57,242,562 8.56E+ 09 0.0228 96.39 54.71 54,983,532 3,032,684 51,950,848
MBV24h1 61,825,850 9.34E+ 09 60,299,100 8.93E+ 09 0.0127 94.49 54.58 58,047,262 2,112,347 55,934,915
MBV24h2 59,229,538 8.94E+ 09 57,746,066 8.56E+ 09 0.0128 94.36 54.43 55,605,127 1,780,562 53,824,565
MBV24h3 58,448,052 8.83E+ 09 57,040,466 8.45E+ 09 0.0126 94.56 54.3 54,944,177 1,642,785 53,301,392