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Table 4 The datasets analyzed in this study from GEO and TCGA

From: A qualitative transcriptional signature for predicting microsatellite instability status of right-sided Colon Cancer

 

GSE39582

(n = 566)

GSE39084

(n = 70)

GSE18088

(n = 53)

GSE75317

(n = 59)

GSE13067

(n = 74)

GSE13294

(n = 155)

TCGA

(n = 457)

Stage

 I

33

8

–

6

–

–

75

 II

264

23

53

24

–

–

178

 III

205

16

–

17

–

–

130

 IV

60

22

–

12

–

–

64

Microsatellite status

 MSI

75

16

19

11

11

78

11

 MSS

444

54

34

48

63

77

81

Location

 Right

224

31

28

26

–

–

261

 Left

342

30

25

33

–

–

177

MSI_proportion

Right

57:154a (27.0%)b

13:18 (41.9%)

14:14 (50.0%)

9:17 (34.6%)

–

–

10:43 (18.9%)

Left

18:290c (5.8%)d

3:27 (10.0%)

5:20 (20.0%)

2:31 (6.1%)

–

–

1:33 (2.9%)

MSI detection

PCR

PCR or IHC

PCR

PCR

PCR

PCR

PCR

Adjuvant chemotherapy

 Yes

233

–

–

–

–

–

–

 No

316

–

53

–

–

–

–

  1. Notes: The data from GEO were produced by the same gene expression profiling platform (GPL570, Affy-HG-U133_Plus_2). a represents the number of MSI and MSS of RCCs, respectively; b represents the proportion of MSI in RCCs; c represents the number of MSI and MSS of LCCs, respectively; d represents the proportion of MSI in LCCs