Table 4 Genome-wide significant pairwise epistatic interactive SNP pairs for BW0
From: A time-dependent genome-wide SNP-SNP interaction analysis of chicken body weight
GGAFa | SNP1 name | GGASa | SNP2 name | P-value |
|---|---|---|---|---|
chr1 | Gga_rs10727935 | chr13 | GgaluGA096558 | 8.36E-12 |
chr1 | GgaluGA010224 | chr4 | Gga_rs14493884 | 3.35E-12 |
chr1 | GgaluGA016211 | chr6 | Gga_rs14588369 | 5.14E-12 |
chr1 | GgaluGA016211 | chr7 | Gga_rs14614638 | 8.22E-12 |
chr1 | Gga_rs13982417 | chrz | Gga_rs15249625 | 9.59E-14 |
chr11 | GGaluGA078115 | chrz | Gga_rs14759127 | 3.84E-12 |
chr12 | Gga_rs14031249 | chr19 | GgaluGA124944 | 2.99E-12 |
chr12 | GgaluGA081258 | chr19 | GgaluGA125308 | 3.89E-12 |
chr14 | Gga_rs15719971 | chr20 | Gga_rs14277625 | 3.21E-12 |
chr19 | Gga_rs10730456 | chrz | Gga_rs16774940 | 3.15E-14 |
chr19 | Gga_rs10730456 | chrz | Gga_rs16774954 | 3.15E-14 |
chr19 | Gga_rs10730456 | chrz | Gga_rs14775753 | 1.06E-12 |
chr19 | Gga_rs14118327 | chrz | Gga_rs16774940 | 1.68E-13 |
chr19 | Gga_rs14118327 | chrz | Gga_rs16774954 | 1.68E-13 |
chr19 | Gga_rs14118327 | chrz | Gga_rs14775753 | 6.41E-12 |
chr19 | Gga_rs15045504 | chrz | Gga_rs16774954 | 6.81E-12 |
chr19 | Gga_rs15045504 | chrz | Gga_rs16774940 | 6.81E-12 |
chr19 | Gga_rs15045732 | chrz | Gga_rs16774940 | 7.62E-14 |
chr19 | Gga_rs15045732 | chrz | Gga_rs16774954 | 7.62E-14 |
chr19 | Gga_rs15045732 | chrz | Gga_rs14775753 | 3.04E-12 |
chr19 | Gga_rs15048206 | chrz | Gga_rs16774954 | 2.53E-13 |
chr19 | Gga_rs15048206 | chrz | Gga_rs16774940 | 2.53E-13 |
chr19 | Gga_rs15048206 | chrz | Gga_rs14775753 | 7.33E-12 |
chr19 | Gga_rs15048223 | chrz | Gga_rs16774940 | 5.90E-13 |
chr19 | Gga_rs15048223 | chrz | Gga_rs16774954 | 5.90E-13 |
chr19 | GgaluGA126270 | chrz | Gga_rs16774954 | 5.78E-12 |
chr19 | GgaluGA126270 | chrz | Gga_rs16774940 | 5.78E-12 |
chr2 | GgaluGA160608 | chr6 | GgaluGA295929 | 7.73E-12 |
chr2 | Gga_rs14135538 | chrz | Gga_rs14755141 | 2.94E-12 |
chr2 | Gga_rs14135538 | chrz | Gga_rs16101791 | 4.79E-12 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16106712 | 6.80E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16065879 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16091913 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16106257 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs14738375 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16071074 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16091907 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16106786 | 7.44E-13 |
chr2 | Gga_rs14184594 | chrz | Gga_rs16776264 | 1.58E-12 |
chr24 | GgaluGA193154 | chrz | Gga_rs14753903 | 2.79E-12 |
chr27 | Gga_rs16208036 | chrz | Gga_rs14762941 | 3.30E-13 |
chr27 | Gga_rs16208036 | chrz | Gga_rs16108466 | 6.00E-13 |
chr27 | GgaluGA199670 | chrz | GgaluGA349792 | 7.85E-13 |
chr3 | Gga_rs14082553 | chr19 | GgaluGA126270 | 9.81E-14 |
chr3 | GgaluGA210739 | chr19 | Gga_rs14119969 | 5.99E-12 |
chr3 | Gga_rs14323198 | chr3 | Gga_rs14394679 | 4.13E-12 |
chr3 | Gga_rs14323198 | chr3 | Gga_rs14395789 | 4.25E-12 |
chr3 | Gga_rs15426103 | chr3 | Gga_rs14323198 | 7.57E-12 |
chr3 | Gga_rs16320563 | chr3 | Gga_rs14323198 | 1.25E-12 |
chr3 | Gga_rs14385387 | chrz | GgaluGA349792 | 1.91E-12 |
chr4 | GgaluGA267201 | chr13 | GgaluGA093775 | 3.69E-12 |
chr4 | GgaluGA268612 | chr4 | Gga_rs16424343 | 4.73E-13 |
chr4 | Gga_rs14490998 | chr5 | GgaluGA289789 | 4.32E-12 |
chr4 | Gga_rs13665914 | chr9 | Gga_rs13608349 | 1.59E-12 |
chr4 | Gga_rs15474576 | chrz | Gga_rs16108466 | 2.69E-13 |
chr5 | Gga_rs15736571 | chrz | Gga_rs14767978 | 7.14E-12 |
chr7 | Gga_rs10728585 | chrz | Gga_rs14759127 | 2.29E-12 |
chr7 | Gga_rs15871969 | chrz | Gga_rs14759127 | 1.08E-13 |
chr7 | Gga_rs15871969 | chrz | Gga_rs14759170 | 2.49E-12 |
chrz | Gga_rs13816749 | chrz | GgaluGA350520 | 2.63E-12 |
chrz | Gga_rs14691748 | chrz | GgaluGA350520 | 7.93E-13 |
chrz | Gga_rs14762941 | chrz | Gga_rs16763798 | 8.37E-12 |
chrz | Gga_rs16080645 | chrz | GgaluGA350520 | 2.63E-12 |
chrz | Gga_rs16685135 | chrz | GgaluGA350520 | 2.63E-12 |
chrz | Gga_rs16763798 | chrz | Gga_rs16108466 | 1.92E-12 |
chrz | Gga_rs16764173 | chrz | Gga_rs16763798 | 7.77E-12 |
chrz | Gga_rs16764637 | chrz | Gga_rs16764173 | 1.60E-12 |