Fig. 4

Consistencies among probes within 50,648 InDels with at least two probes genotyped in 362 inbred lines. a Distribution of the average allelic frequencies of present calls over all probes. b Variation of proportion of genotypes not fully consistent across all probes (FreqDiff01). The black and gray curves with triangle points represent the variation of the median and average FreqDiff01 across InDels, respectively. Colored curves with circle points represent the expected variation of the proportion for different error rates (1%: red, 3%: green, 5%: light blue, 10%: dark blue). Frequencies of 1 (presence) and 0 (absence) indicate that all probes had consistent genotypes for the corresponding inbred line. Intermediate frequencies indicate that at least one probe was not consistent with the other probes for the same InDel in one inbred line