Table 2 Number of probes and targeted InDels before and after selection for array design and passing the Affymetrix® quality control according to different probes type. Percentages are indicated in brackets
Before selection | On array | Called by Affymetrix® pipeline | ||||
|---|---|---|---|---|---|---|
Probes | InDela | Probes | InDela | Probes | InDela | |
BP Type1 | 6,648 (0.02%) | 3,324 (2.82%) | 4,691 (0.71%) | 2,751 (2.6%) | 2,092 (0.44%) | 1,482 (1.66%) |
BP Type2 | 51,770 (0.2%) | 25,885 (21.98%) | 38,790 (5.85%) | 22,662 (21.39%) | 20,540 (4.29%) | 14,407 (16.12%) |
BP Type3 | 71,820 (0.27%) | 35,910 (30.5%) | 41,272 (6.23%) | 27,897 (26.34%) | 23,631 (4.93%) | 18,485 (20.68%) |
BP Type4 | 312 (0.001%) | 156 (0.13%) | 241 (0.04%) | 146 (0.14%) | 119 (0.02%) | 93 (0.1%) |
OTV | 872,324 (3.26%) | 21,390 (18.16%) | 163,278 (24.64%) | 18,558 (17.52%) | 96,867 (20.22%) | 15,064 (16.85%) |
MONO | 25,735,797 (96.25%) | 68,573 (58.23%) | 414,500 (62.54%) | 65,796 (62.11%) | 335,778 (70.1%) | 63,597 (71.14%) |
ALL | 26,738,671 | 117,756 | 662,772 | 105,927 | 479,027 | 89,393 |