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Table 3 Haplotypes obtained using SNPs from GWAS for the accessions

From: Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development

Haplotype ID

 

SNPs Positions In The Soybean Genome

 

SSC Phenotype

 

Differential Genotypes

1,744,370

1,768,793

1,744,518

R

S

Total

Hap1

Hutcheson/PI 398469

C

C

C

124

1

125

Hap2

Crockett

C

C

A

36

0

36

Hap3

Tracy-M/D85–10404

C

G

A

23

2

25

Hap4

Dowling/D85–10412

T

G

A

5

70

75

  1. SNP positions: physical positions of allelic variants on chromosome 14 of the soybean genome (Wm82.a2); R: SSC-resistant accessions; S: SSC-susceptible accessions. In the haplotype analyses, only accessions showing homozygous alleles for all three SNPs were considered
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BMC Genomics

ISSN: 1471-2164

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