Skip to main content

Table 3 Breed group total number of genome positions that display SNP copy number gains and losses

From: Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Breeds

N of individuals

SNP CNV

% Unique private CNVa

gains

losses

gains

losses

Draught

624

7527 (12.06)

6041 (9.68)

1.99

18.66

Warmblood

864

13,133 (15.20)

5591 (6.47)

8.62

19.19

Friesian

266

56,033 (210.65)

7142 (26.85)

10.47

1.43

  1. SNP CNVs compared to the average signal of the reference (Belgian draught horse). The average number of SNP CNVs / group cluster is given within brackets. The percentage of group specific (unique private) SNP CNV gains and losses in the genome are also shown. aThe sex chromosomes are not included in the total genome size. Every genome position showed a particular SNP CNV in at least 1% of the samples within breed group