TY - JOUR AU - Tena, G. AU - Asai, T. AU - Chiu, W. L. AU - Sheen, J. PY - 2001 DA - 2001// TI - Plant mitogen-activated protein kinase signaling cascades JO - Curr Opin Plant Biol VL - 4 UR - https://doi.org/10.1016/S1369-5266(00)00191-6 DO - 10.1016/S1369-5266(00)00191-6 ID - Tena2001 ER - TY - JOUR AU - Ichimura, K. PY - 2002 DA - 2002// TI - Mitogen-activated protein kinase cascades in plants: a new nomenclature JO - Trends Plant Sci VL - 7 UR - https://doi.org/10.1016/S1360-1385(02)02302-6 DO - 10.1016/S1360-1385(02)02302-6 ID - Ichimura2002 ER - TY - JOUR AU - Jonak, C. AU - Okrész, L. AU - Bögre, L. AU - Hirt, H. PY - 2002 DA - 2002// TI - Complexity, cross talk and integration of plant MAP kinase signalling JO - Curr Opin Plant Biol VL - 5 UR - https://doi.org/10.1016/S1369-5266(02)00285-6 DO - 10.1016/S1369-5266(02)00285-6 ID - Jonak2002 ER - TY - JOUR AU - Zhang, T. AU - Liu, Y. AU - Yang, T. AU - Zhang, L. AU - Xu, S. AU - Xue, L. AU - An, L. PY - 2006 DA - 2006// TI - Diverse signals converge at MAPK cascades in plant JO - Plant Physiol Biochem VL - 44 UR - https://doi.org/10.1016/j.plaphy.2006.06.004 DO - 10.1016/j.plaphy.2006.06.004 ID - Zhang2006 ER - TY - JOUR AU - Hamel, L. P. AU - Nicole, M. C. AU - Sritubtim, S. AU - Morency, M. J. AU - Ellis, M. PY - 2006 DA - 2006// TI - Ancient signals: comparative genomics of plant MAPK and MAPKK gene families JO - Trends Plant Sci VL - 11 UR - https://doi.org/10.1016/j.tplants.2006.02.007 DO - 10.1016/j.tplants.2006.02.007 ID - Hamel2006 ER - TY - JOUR AU - Pitzschke, A. AU - Schikora, A. AU - Hirt, H. PY - 2009 DA - 2009// TI - MAPK cascade signalling networks in plant defence JO - Curr Opin Plant Biol VL - 12 UR - https://doi.org/10.1016/j.pbi.2009.06.008 DO - 10.1016/j.pbi.2009.06.008 ID - Pitzschke2009 ER - TY - JOUR AU - Hao, L. AU - Wen, Y. AU - Zhao, Y. AU - Lu, W. AU - Xiao, K. PY - 2015 DA - 2015// TI - Wheat mitogen-activated protein kinase gene TaMPK4 improves plant tolerance to multiple stresses through modifying root growth, ROS metabolism, and nutrient acquisitions JO - Plant Cell Rep VL - 34 UR - https://doi.org/10.1007/s00299-015-1853-2 DO - 10.1007/s00299-015-1853-2 ID - Hao2015 ER - TY - JOUR AU - Menzel, W. i. l. h. e. l. m. AU - Stenzel, I. r. e. n. e. AU - Helbig, L. i. s. a. ‐. M. a. r. i. e. AU - Krishnamoorthy, P. r. a. v. e. e. n. AU - Neumann, S. u. s. a. n. n. e. AU - Eschen‐Lippold, L. e. n. n. a. r. t. AU - Heilmann, M. a. r. e. i. k. e. AU - Lee, J. u. s. t. i. n. AU - Heilmann, I. n. g. o. PY - 2019 DA - 2019// TI - A PAMP ‐triggered MAPK cascade inhibits phosphatidylinositol 4,5‐bisphosphate production by PIP 5K6 in Arabidopsis thaliana JO - New Phytologist VL - 224 UR - https://doi.org/10.1111/nph.16069 DO - 10.1111/nph.16069 ID - Menzel2019 ER - TY - JOUR AU - Rohila, J. S. AU - Yang, Y. PY - 2007 DA - 2007// TI - Rice mitogen-activated protein kinase gene family and its role in biotic and abiotic stress response JO - J Integr Plant Biol VL - 49 UR - https://doi.org/10.1111/j.1744-7909.2007.00501.x DO - 10.1111/j.1744-7909.2007.00501.x ID - Rohila2007 ER - TY - JOUR AU - Rao, K. P. AU - Richa, T. AU - Kumar, K. AU - Raghuram, B. AU - Sinha, A. K. PY - 2010 DA - 2010// TI - In silico analysis reveals 75 members of mitogen-activated protein kinase kinase kinase gene family in rice JO - DNA Res VL - 17 UR - https://doi.org/10.1093/dnares/dsq011 DO - 10.1093/dnares/dsq011 ID - Rao2010 ER - TY - JOUR AU - Wankhede, D. P. AU - Misra, M. AU - Singh, P. AU - Sinha, A. K. PY - 2013 DA - 2013// TI - Rice mitogen activated protein kinase kinase and mitogen activated protein kinase interaction network revealed by in-silico docking and yeast two-hybrid approaches JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0065011 DO - 10.1371/journal.pone.0065011 ID - Wankhede2013 ER - TY - JOUR AU - Chen, L. AU - Hu, W. AU - Tan, S. AU - Wang, M. AU - Ma, Z. AU - Zhou, S. AU - Deng, X. AU - Zhang, Y. AU - Huang, C. AU - Yang, G. PY - 2012 DA - 2012// TI - Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046744 DO - 10.1371/journal.pone.0046744 ID - Chen2012 ER - TY - JOUR AU - Feng, K. AU - Liu, F. AU - Zou, J. AU - Xing, G. AU - Deng, P. AU - Song, W. AU - Tong, W. AU - Nie, X. PY - 2016 DA - 2016// TI - Genome-wide identification, evolution and co-expression network analysis of mitogen-activated protein kinase kinase kinases in Brachypodium distachyon JO - Front Plant Sci VL - 7 ID - Feng2016 ER - TY - JOUR AU - Liu, Y. AU - Zhang, D. AU - Wang, L. AU - Li, D. PY - 2013 DA - 2013// TI - Genome-wide analysis of mitogen-activated protein kinase gene family in maize JO - Plant Mol Biol Report VL - 31 UR - https://doi.org/10.1007/s11105-013-0623-y DO - 10.1007/s11105-013-0623-y ID - Liu2013 ER - TY - JOUR AU - Kong, X. AU - Pan, J. AU - Zhang, D. AU - Jiang, S. AU - Cai, G. AU - Wang, L. AU - Li, D. PY - 2013 DA - 2013// TI - Identification of mitogen-activated protein kinase kinase gene family and MKK–MAPK interaction network in maize JO - Biochem Biophys Res Commun VL - 441 UR - https://doi.org/10.1016/j.bbrc.2013.11.008 DO - 10.1016/j.bbrc.2013.11.008 ID - Kong2013 ER - TY - JOUR AU - Asai, T. AU - Tena, G. AU - Plotnikova, J. AU - Willmann, M. R. AU - Chiu, W. L. AU - Gomezgomez, L. AU - Boller, T. AU - Ausubel, F. M. AU - Sheen, J. PY - 2002 DA - 2002// TI - MAP kinase signaling cascade in Arabidopsis innate immunity JO - Nature VL - 415 UR - https://doi.org/10.1038/415977a DO - 10.1038/415977a ID - Asai2002 ER - TY - JOUR AU - Galletti, R. AU - Ferrari, S. AU - De, L. G. PY - 2011 DA - 2011// TI - Arabidopsis MPK3 and MPK6 play different roles in basal and oligogalacturonide- or flagellin-induced resistance against Botrytis cinerea JO - Plant Physiol VL - 157 UR - https://doi.org/10.1104/pp.111.174003 DO - 10.1104/pp.111.174003 ID - Galletti2011 ER - TY - JOUR AU - Eckardt, N. A. PY - 2007 DA - 2007// TI - A complete MAPK signaling cascade that functions in stomatal development and patterning in Arabidopsis JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.107.190110 DO - 10.1105/tpc.107.190110 ID - Eckardt2007 ER - TY - JOUR AU - Petersen, M. AU - Brodersen, P. AU - Naested, H. AU - Andreasson, E. AU - Lindhart, U. AU - Johansen, B. AU - Nielsen, H. B. AU - Lacy, M. AU - Austin, M. J. AU - Parker, J. E. PY - 2000 DA - 2000// TI - Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance JO - Cell VL - 103 UR - https://doi.org/10.1016/S0092-8674(00)00213-0 DO - 10.1016/S0092-8674(00)00213-0 ID - Petersen2000 ER - TY - JOUR AU - Qiu, J. L. AU - Zhou, L. AU - Yun, B. W. AU - Nielsen, H. B. AU - Fiil, B. K. AU - Petersen, K. AU - Mackinlay, J. AU - Loake, G. J. AU - Mundy, J. AU - Morris, P. C. PY - 2008 DA - 2008// TI - Arabidopsis mtogen-activated protein kinase kinases MKK1 and MKK2 have overlapping functions in defense signaling mediated by MEKK1, MPK4, and MKS1 JO - Plant Physiol VL - 148 UR - https://doi.org/10.1104/pp.108.120006 DO - 10.1104/pp.108.120006 ID - Qiu2008 ER - TY - JOUR AU - Furuya, T. AU - Matsuoka, D. AU - Nanmori, T. PY - 2014 DA - 2014// TI - Membrane rigidification functions upstream of the MEKK1-MKK2-MPK4 cascade during cold acclimation in Arabidopsis thaliana JO - FEBS Lett VL - 588 UR - https://doi.org/10.1016/j.febslet.2014.04.032 DO - 10.1016/j.febslet.2014.04.032 ID - Furuya2014 ER - TY - JOUR AU - Danquah, A. AU - De, Z. A. AU - Boudsocq, M. AU - Neubauer, J. AU - Frei, D. F. N. AU - Leonhardt, N. AU - Pateyron, S. AU - Gwinner, F. AU - Tamby, J. P. AU - Ortizmasia, D. PY - 2015 DA - 2015// TI - Identification and characterization of an ABA-activated MAP kinase cascade in Arabidopsis thaliana JO - Plant J Cell Mol Biol VL - 82 UR - https://doi.org/10.1111/tpj.12808 DO - 10.1111/tpj.12808 ID - Danquah2015 ER - TY - JOUR AU - Liu, Y. AU - Schiff, M. AU - Dineshkumar, S. P. PY - 2004 DA - 2004// TI - Involvement of MEK1 MAPKK, NTF6 MAPK, WRKY/MYB transcription factors, COI1 and CTR1 in N-mediated resistance to tobacco mosaic virus JO - Plant J Cell Mol Biol VL - 38 UR - https://doi.org/10.1111/j.1365-313X.2004.02085.x DO - 10.1111/j.1365-313X.2004.02085.x ID - Liu2004 ER - TY - JOUR AU - Soyano, T. AU - Nishihama, R. AU - Morikiyo, K. AU - Ishikawa, M. AU - Machida, Y. PY - 2003 DA - 2003// TI - NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK cascade and is required for plant cytokinesis JO - Genes Dev VL - 17 UR - https://doi.org/10.1101/gad.1071103 DO - 10.1101/gad.1071103 ID - Soyano2003 ER - TY - JOUR AU - Mayer, K. F. X. AU - Waugh, R. AU - Langridge, P. AU - Close, T. J. AU - Wise, R. P. AU - Graner, A. AU - Matsumoto, T. AU - Sato, K. AU - Schulman, A. AU - Muehlbauer, G. J. PY - 2012 DA - 2012// TI - A physical, genetic and functional sequence assembly of the barley genome JO - Nature VL - 491 UR - https://doi.org/10.1038/nature11543 DO - 10.1038/nature11543 ID - Mayer2012 ER - TY - JOUR AU - Mascher, M. AU - Gundlach, H. AU - Himmelbach, A. AU - Beier, S. AU - Twardziok, S. O. AU - Wicker, T. AU - Radchuk, V. AU - Dockter, C. AU - Hedley, P. E. AU - Russell, J. PY - 2017 DA - 2017// TI - A chromosome conformation capture ordered sequence of the barley genome JO - Nature VL - 544 UR - https://doi.org/10.1038/nature22043 DO - 10.1038/nature22043 ID - Mascher2017 ER - TY - JOUR AU - Lv, S. Z. AU - Nie, X. J. AU - Wang, L. AU - Biradar, S. B. AU - Jia, X. O. AU - Weining, S. PY - 2012 DA - 2012// TI - Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by Solexa sequencing JO - Int J Mol Sci VL - 13 UR - https://doi.org/10.3390/ijms13032973 DO - 10.3390/ijms13032973 ID - Lv2012 ER - TY - JOUR AU - Křenek, P. AU - Niks, R. E. AU - Vels, A. AU - Vyplelová, P. AU - Šamaj, J. PY - 2015 DA - 2015// TI - Genome-wide analysis of the barley MAPK gene family and its expression patterns in relation to Pucciniahordei infection JO - Acta Physiol Plant VL - 37 UR - https://doi.org/10.1007/s11738-015-2010-9 DO - 10.1007/s11738-015-2010-9 ID - Křenek2015 ER - TY - JOUR AU - Wang, M. AU - Yue, H. AU - Feng, K. AU - Deng, P. AU - Song, W. AU - Nie, X. PY - 2016 DA - 2016// TI - Genome-wide identification, phylogeny and expressional profiles of mitogen activated protein kinase kinase kinase (MAPKKK) gene family in bread wheat (Triticum aestivum L.) JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2993-7 DO - 10.1186/s12864-016-2993-7 ID - Wang2016 ER - TY - STD TI - Jiang M, Wen F, Cao J, Li P, She J, Chu Z. Genome-wide exploration of the molecular evolution and regulatory network of mitogen-activated protein kinase cascades upon multiple stresses in Brachypodium distachyon. BMC Genomics. 2015;16:228. ID - ref30 ER - TY - JOUR AU - Lehti-Shiu, M. D. AU - Shiu, S. H. PY - 2012 DA - 2012// TI - Diversity, classification and function of the plant protein kinase superfamily JO - Philos Trans R Soc Lond Ser B Biol Sci VL - 367 UR - https://doi.org/10.1098/rstb.2012.0003 DO - 10.1098/rstb.2012.0003 ID - Lehti-Shiu2012 ER - TY - JOUR AU - Ye, J. AU - Yang, H. AU - Shi, H. AU - Wei, Y. AU - Tie, W. AU - Ding, Z. AU - Yan, Y. AU - Luo, Y. AU - Xia, Z. AU - Wang, W. AU - Peng, M. AU - Li, K. AU - Zhang, H. AU - Hu, W. PY - 2017 DA - 2017// TI - The MAPKKK gene family in cassava: genome-wide identification and expression analysis against drought stress JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-13988-8 DO - 10.1038/s41598-017-13988-8 ID - Ye2017 ER - TY - JOUR AU - Colcombet, J. AU - Hirt, H. PY - 2008 DA - 2008// TI - Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes JO - Biochem J VL - 413 UR - https://doi.org/10.1042/BJ20080625 DO - 10.1042/BJ20080625 ID - Colcombet2008 ER - TY - JOUR AU - Wilson, M. A. AU - Iser, W. B. AU - Son, T. G. AU - Logie, A. AU - Cabral-Costa, J. V. AU - Mattson, M. P. AU - Camandola, S. PY - 2017 DA - 2017// TI - Skn-1 is required for interneuron sensory integration and foraging behavior in Caenorhabditis elegans JO - PLoS ONE VL - 12 UR - https://doi.org/10.1371/journal.pone.0176798 DO - 10.1371/journal.pone.0176798 ID - Wilson2017 ER - TY - JOUR AU - Akhunov, E. D. AU - Sunish, S. AU - Hanquan, L. AU - Shichen, W. AU - Akhunova, A. R. AU - Gaganpreet, K. AU - Wanlong, L. AU - Forrest, K. L. AU - Deven, S. AU - Hana, S. PY - 2013 DA - 2013// TI - Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat JO - Plant Physiol VL - 161 UR - https://doi.org/10.1104/pp.112.205161 DO - 10.1104/pp.112.205161 ID - Akhunov2013 ER - TY - JOUR AU - Wang, Y. AU - Liu, K. AU - Liao, H. AU - Zhuang, C. AU - Ma, H. AU - Yan, X. PY - 2008 DA - 2008// TI - The plant WNK gene family and regulation of flowering time in Arabidopsis JO - Plant Biol (Stuttg) VL - 10 UR - https://doi.org/10.1111/j.1438-8677.2008.00072.x DO - 10.1111/j.1438-8677.2008.00072.x ID - Wang2008 ER - TY - JOUR AU - Wang, C. AU - He, X. AU - Li, Y. AU - Wang, L. AU - Guo, X. AU - Guo, X. PY - 2018 DA - 2018// TI - The cotton MAPK kinase GhMPK20 negatively regulates resistance to Fusarium oxysporum by mediating the MKK4-MPK20-WRKY40 cascade JO - Mol Plant Pathol VL - 19 UR - https://doi.org/10.1111/mpp.12635 DO - 10.1111/mpp.12635 ID - Wang2018 ER - TY - JOUR AU - Sethi, V. AU - Raghuram, B. AU - Sinha, A. K. AU - Chattopadhyay, S. PY - 2014 DA - 2014// TI - A mitogen-activated protein kinase cascade module, MKK3-MPK6 and MYC2, is involved in blue light-mediated seedling development in Arabidopsis JO - Plant Cell VL - 26 UR - https://doi.org/10.1105/tpc.114.128702 DO - 10.1105/tpc.114.128702 ID - Sethi2014 ER - TY - JOUR AU - Schikora, A. AU - Carreri, A. AU - Charpentier, E. AU - Hirt, H. PY - 2008 DA - 2008// TI - The dark side of the salad: Salmonella typhimurium overcomes the innate immune response of Arabidopsis thaliana and shows an endopathogenic lifestyle JO - PLoS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0002279 DO - 10.1371/journal.pone.0002279 ID - Schikora2008 ER - TY - JOUR AU - Dóczi, R. AU - Brader, G. AU - Pettkó-Szandtner, A. AU - Rajh, I. AU - Djamei, A. AU - Pitzschke, A. AU - Teige, M. AU - Hirt, H. PY - 2007 DA - 2007// TI - The Arabidopsis mitogen-activated protein kinase kinase MKK3 is upstream of group C mitogen-activated protein kinases and participates in pathogen signaling JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.106.050039 DO - 10.1105/tpc.106.050039 ID - Dóczi2007 ER - TY - JOUR AU - Larkin, M. A. AU - Blackshields, G. AU - Brown, N. AU - Chenna, R. AU - McGettigan, P. A. AU - McWilliam, H. AU - Valentin, F. AU - Wallace, I. M. AU - Wilm, A. AU - Lopez, R. PY - 2007 DA - 2007// TI - ClustalW and Clustal X version 2.0 JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm404 DO - 10.1093/bioinformatics/btm404 ID - Larkin2007 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Lescot, M. AU - Déhais, P. AU - Thijs, G. AU - Marchal, K. AU - Moreau, Y. AU - Peer, Y. AU - Rouzé, P. AU - Rombauts, S. PY - 2002 DA - 2002// TI - PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.325 DO - 10.1093/nar/30.1.325 ID - Lescot2002 ER - TY - JOUR AU - Gu, Z. AU - Cavalcanti, A. AU - Chen, F. C. AU - Bouman, P. AU - Li, W. H. PY - 2002 DA - 2002// TI - Extent of gene duplication in the genomes of Drosophila, nematode, and yeast JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004079 DO - 10.1093/oxfordjournals.molbev.a004079 ID - Gu2002 ER - TY - JOUR AU - Wang, Y. AU - Tang, H. AU - DeBarry, J. D. AU - Tan, X. AU - Li, J. AU - Wang, X. AU - Lee, T. -. h. AU - Jin, H. AU - Marler, B. AU - Guo, H. PY - 2012 DA - 2012// TI - MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1293 DO - 10.1093/nar/gkr1293 ID - Wang2012 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: phylogenetic analysis by maximum likelihood JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Conesa, A. AU - Götz, S. AU - García-Gómez, J. M. AU - Terol, J. AU - Talón, M. AU - Robles, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER - TY - JOUR AU - Pertea, M. AU - Kim, D. AU - Pertea, G. M. AU - Leek, J. T. AU - Salzberg, S. L. PY - 2016 DA - 2016// TI - Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown JO - Nat Protoc VL - 11 UR - https://doi.org/10.1038/nprot.2016.095 DO - 10.1038/nprot.2016.095 ID - Pertea2016 ER - TY - JOUR AU - Zhang, B. AU - Horvath, S. PY - 2005 DA - 2005// TI - A general framework for weighted gene co-expression network analysis JO - Stat Appl Genet Mol Biol VL - 4 UR - https://doi.org/10.2202/1544-6115.1128 DO - 10.2202/1544-6115.1128 ID - Zhang2005 ER - TY - JOUR AU - Dai, X. AU - Zhuang, Z. AU - Zhao, P. X. PY - 2018 DA - 2018// TI - psRNATarget: a plant small RNA target analysis server (2017 release) JO - Nucleic Acids Res VL - 46 UR - https://doi.org/10.1093/nar/gky316 DO - 10.1093/nar/gky316 ID - Dai2018 ER -