Table 2 The important signaling proteins that were identified

 NNU_05425-RA

CSN4: COP9 signalosome complex subunit 4

1

N/A

N/A

 NNU_15063-RA

CSN5A: COP9 signalosome complex subunit 5a

N/A

1

N/A

 NNU_08779-RA

CSN1: COP9 signalosome complex subunit 1

N/A

N/A

1

 NNU_09851-RA

PHYA: Phytochrome A

1

N/A

0.85

 NNU_22076-RA

NDPK2: Nucleoside diphosphate kinase 2C chloroplastic

N/A

1

N/A

 NNU_14358-RA

Similar to Nucleoside diphosphate kinase B

1

1.19

0.71

 NNU_17592-RA

FYPP: Phytochrome-associated serine/threonine protein phosphatase

1

N/A

N/A

 NNU_20168-RA

Similar to At1g80670: Rae1-like protein; may be involved in the formation of a CUL4-based E3 ubiquitin ligase

N/A

1

N/A

 NNU_26357-RA

HY5: Transcription factor HY5

N/A

1

N/A

 NNU_11842-RA

Similar to EFL4: Protein ELF4-LIKE 4

N/A

1

N/A

 NNU_16002-RA

Similar to FRI: Protein FRIGIDA

N/A

1

N/A

 NNU_13682-RA

 NNU_15726-RA

Similar to VCX1: Vacuolar calcium ion transporter

N/A

N/A

1

 NNU_15143-RA

Similar to ECA4: Calcium-transporting ATPase 2C endoplasmic reticulum-type

1

N/A

1.16

 NNU_12400-RA

 NNU_05804-RA

Similar to Os12g0586600: Calcium-transporting ATPase 2C plasma membrane-type

1

N/A

N/A

 NNU_04273-RA

Similar to CHERP: Calcium homeostasis endoplasmic reticulum protein

1

N/A

N/A

 NNU_12646-RA

Similar to cbpP: Calcium-binding protein P

1

1.46

N/A

 NNU_17533-RA

Similar to CALM1: Calmodulin

1

1.11

N/A

 NNU_10822-RA

Similar to CAM-1: Calmodulin-1/11/16

1

1.22

1.58

 NNU_20726-RA

Similar to CAM72: Calmodulin-2

N/A

N/A

1

 NNU_01778-RA

Similar to CML6: Calmodulin-like protein 6

1

1.31

1.07

 NNU_23435-RA

Similar to CML11: Calmodulin-like protein 11

N/A

N/A

1

 NNU_06675-RA

Similar to CML13: Probable calcium-binding protein CML13

1

1.14

0.19

 NNU_08869-RA

 NNU_05884-RA

Similar to Calreticulin

1

1.06

0.8

 NNU_02729-RA

Similar to CRT3: Calreticulin-3

N/A

1

N/A

 NNU_09020-RA

Similar to CNB1: Calcineurin subunit B

1

N/A

N/A

 NNU_13577-RA

Similar to Caltractin

1

1.42

N/A

 NNU_22365-RA

Similar to Calnexin homolog

1

0.73

0.92

 NNU_13438-RA

Similar to ANN1: Annexin D1

1

N/A

1.24

 NNU_22480-RA

Similar to ANN2: Annexin D2

1

N/A

1

 NNU_01039-RA

Similar to ANN3: Annexin D3

1

N/A

N/A

 NNU_15418-RA

Similar to ANN4: Annexin D4

1

N/A

N/A

 NNU_14855-RA

Similar to ANN5: Annexin D5

1

N/A

N/A

 NNU_01040-RA

Similar to Annexin-like protein RJ4

1

1.4

2.65

 NNU_15823-RA

Similar to CPK2: Calcium-dependent protein kinase isoform 2

1

N/A

N/A

 NNU_03392-RA

 NNU_01413-RA

CPK3: Calcium-dependent protein kinase 3

1

N/A

N/A

 NNU_09473-RA

CPK4: Calcium-dependent protein kinase 4

1

N/A

N/A

 NNU_04896-RA

CPK11: Calcium-dependent protein kinase 11

N/A

N/A

1

 NNU_23405-RA

Similar to Auxin-induced protein PCNT115

1

1.59

1.14

 NNU_10627-RA

 NNU_23183-RA

 NNU_23179-RA

 NNU_06219-RA

AXR4: Protein AUXIN RESPONSE 4

N/A

N/A

1

 NNU_11159-RA

Similar to Auxin-repressed 12.5 kDa protein

1

N/A

N/A

 NNU_21253-RA

AIR12: Auxin-induced in root cultures protein 12

N/A

N/A

1

 NNU_02652-RA

Similar to At4g12780: Auxilin-related protein 1

N/A

1

N/A

 NNU_07873-RA

Similar to At4g12770: Auxilin-related protein 2

N/A

1

N/A

 NNU_14842-RA

Similar to IAR1: IAA-alanine resistance protein 1

N/A

N/A

1

 NNU_23868-RA

Similar to SKP1A: SKP1-like protein 1A

1

2.39

1.43

 NNU_18445-RA

Similar to SKP1B: SKP1-like protein 1B

N/A

1

N/A

 NNU_14125-RA

Similar to CUL1: Cullin-1

N/A

N/A

1

 NNU_05447-RA

Similar to RCE1: NEDD8-conjugating enzyme Ubc12

1

1.8

1.39

 NNU_16590-RA

 NNU_24561-RA

Similar to CAND1: Cullin-associated NEDD8-dissociated protein 1

1

N/A

3.33

 NNU_24562-RA

 NNU_06166-RA

Similar to ECR1: NEDD8-activating enzyme E1 catalytic subunit

1

N/A

N/A

 NNU_03382-RA

Similar to AXR1: NEDD8-activating enzyme E1 regulatory subunit

N/A

N/A

1

 NNU_04189-RA

ILL1: IAA-amino acid hydrolase ILR1-like 1

1

1

0.69

 NNU_25480-RA

ILL7: IAA-amino acid hydrolase ILR1-like 7

N/A

N/A

1

 NNU_07652-RA

Similar to 14–3-3-like protein

1

0.52

1.14

 NNU_00542-RA

 NNU_22679-RA

Similar to 14–3-3-like protein (Pisum sativum)

1

0.4

1

 NNU_13400-RA

Similar to TFT7: 14–3-3 protein 7

1

N/A

N/A

 NNU_04500-RA

Similar to GRF12: 14–3-3-like protein GF14. Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

1

1

N/A

 NNU_00971-RA

Similar to GF14D: 14–3-3-like protein D

1

N/A

0.5

 NNU_08512-RA

 NNU_13288-RA

Similar to GRF8: 14–3-3-like protein GF14 kappa

1

N/A

1.28