Table 2 Number of CNVs detected in tomato samples before and after filtering
From: Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
Sample | No filter | Read depth filter | Read depth and gap filter |
|---|---|---|---|
PI158760 | 482 | 347 | 97 |
LA2706 | 934 | 701 | 403 |
TR00003 | 1487 | 1162 | 880 |
LA4451 | 1789 | 1482 | 1095 |
LA2157 | 7127 | 5372 | 4851 |
LA0716 | 10064 | 8472 | 7910 |
LYC4 | 11988 | 9950 | 9407 |