Table 4 Overlap of filtered CNVs with repeats, genes, and coding sequences (CDS) in tomato samples
From: Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
Sample | Sequence | Repeats | Genes | CDS |
|---|---|---|---|---|
covered (Mb) | (% of total) | (% of total) | (% of total) | |
PI158760 | 0.21 | 64.9 | 12.38 | 2.32 |
LA2706 | 0.46 | 75.59 | 12.47 | 1.73 |
TR00003 | 1.59 | 84.01 | 9.38 | 1.89 |
LA4451 | 1.21 | 76.26 | 11.78 | 1.11 |
LA2157 | 8.59 | 82.79 | 11.01 | 1.25 |
LA0716 | 12.11 | 85.47 | 12.19 | 1.29 |
LYC4 | 12.13 | 81.53 | 13.41 | 1.04 |