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Fig. 2 | BMC Genomics

Fig. 2

From: Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation

Fig. 2

Global analysis of DEGs in rhizobia-inoculated and mycorrhized roots of P. vulgaris. a Heatmap of the total number of DEGs in roots at 7 dpi with R. tropici (Rhiz) or R. irregularis (Myc) relative to the noninoculated roots. b-e Venn diagrams indicate the total number of DEGs (b), and the numbers of upregulated (Up) (c), downregulated (Down) (d), and overlapping (e) genes in the rhizobia-inoculated and mycorrhizal roots. The DEGs were identified using a cutoff threshold of Log2FC ≥ 1.5 and a P-adj/FDR ≤ 0.05 in the DESeq, EdgeR, and NOISeq packages of Bioconductor R

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BMC Genomics

ISSN: 1471-2164

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