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Table 1 Sixty-nine unique genes in E. coli C genome

From: Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research

Lp Gene Name or Prokka group Function - gene description
1 mhpB_2 2,3-Dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase
2 yniC_1 2-Deoxyglucose-6-phosphate phosphatase
3 mhpC_2 2-Hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase
4 mhpD_2 2-Keto-4-pentenoate hydratase
5 mhpA_2 3-(3-Hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
6 mhpE_2 4-Hydroxy-2-oxovalerate aldolase
7 pcaK_2 4-Hydroxybenzoate transporter PcaK
8 mhpF_2 Acetaldehyde dehydrogenase
9 group_2290 Acetyltransferase (GNAT) family protein
10 group_2332 Alpha/beta hydrolase family protein
11 csbX_1 Alpha-ketoglutarate permease
12 csbX_2 Alpha-ketoglutarate permease
13 group_2293 Ankyrin repeats (3 copies)
14 group_2295 Ankyrin repeats (3 copies)
15 group_2370 Ankyrin repeats (3 copies)
16 clpC ATP-dependent Clp protease ATP-binding subunit ClpC
17 ftsH3 ATP-dependent zinc metalloprotease FtsH 3
18 ftsH4 ATP-dependent zinc metalloprotease FtsH 4
19 group_2325 Cell envelope integrity inner membrane protein TolA
20 bcsA_2 Cellulose synthase catalytic subunit [UDP-forming]
21 wzzB_1 Chain length determinant protein
22 group_2304 Colanic acid exporter
23 dtpD_2 Dipeptide permease D
24 group_337 DNA-binding transcriptional regulator AraC
25 group_258 Esterase YqiA
26 group_343 Fructosamine kinase
27 group_2307 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase
28 group_2365 Glutathione-regulated potassium-efflux system protein KefC
29 ltrA_1 Group II intron-encoded protein LtrA
30 ltrA_2 Group II intron-encoded protein LtrA
31 ltrA_3 Group II intron-encoded protein LtrA
32 ltrA_4 Group II intron-encoded protein LtrA
33 ltrA_6 Group II intron-encoded protein LtrA
34 dmlR_8 HTH-type transcriptional regulator DmlR
35 group_2333 HTH-type transcriptional regulator DmlR
36 hyfB_4 Hydrogenase-4 component B
37 lacR_2 Lactose phosphotransferase system repressor
38 tdh_2 L-Threonine 3-dehydrogenase
39 malI_1 Maltose regulon regulatory protein MalI
40 mtlK_2 Mannitol 2-dehydrogenase
41 pglA N,N′-Diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase
42 group_190 Outer membrane usher protein HtrE precursor
43 group_240 Periplasmic dipeptide transport protein precursor
44 group_2366 Phosphate-starvation-inducible E
45 pduV_2 Propanediol utilization protein PduV
46 nepI_2 Purine ribonucleoside efflux pump NepI
47 group_2 Putative deoxyribonuclease RhsC
48 group_49 Putative fimbrial-like adhesin protein
49 argK_2 Putative GTPase ArgK
50 group_330 Putative HTH-type transcriptional regulator YbbH
51 group_168 Putative lysophospholipase
52 group_2341 Putative oxidoreductase
53 hhoB Putative serine protease HhoB precursor
54 group_2281 Recombination protein F
55 rbtD Ribitol 2-dehydrogenase
56 group_2319 Ribokinase
57 araB_1 Ribulokinase
58 hspA_1 Spore protein SP21
59 hspA_2 Spore protein SP21
60 trxC_2 Thioredoxin-2
61 lsrR_1 Transcriptional regulator LsrR
62 group_2327 Type I restriction enzyme EcoKI subunit R
63 hsdR_1 Type I restriction enzyme EcoR124II R protein
64 hsdR_2 Type-1 restriction enzyme R protein
65 group_2288 Tyrosine recombinase XerD
66 group_2310 UDP-glucose 4-epimerase
67 xylB_2 Xylulose kinase
68 group_2360 YfdX protein
69 group_2361 YfdX protein