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Table 3 Bacterial strains used in this work

From: Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research

Strain

Genotype

Source

E. coli C

WT

Holly A. Wichman, James Bull, UofI, UT.

E. coli K12 MG1655

WT

Lab collection

E. coli Crooks

WT

Lonnie Ingram, UF

E. coli B

WT

ATCC

E. coli W

WT

ATCC

E.coli K12 csrA

csrA::mini-Tn5 KmR

Tony Romeo, UF

E. coli K12 MG1655 EC100

FmcrA ∆(mrr-hsdRMS-mcrBC) φ80dlacZ∆M15 ∆lac

X74 recA1 endA1 araD139 ∆(ara, leu)7697 galU galK λ–rpsL nupG.

Lucigen

Plasmids

 pBBR1MCS-5

Broad host range mobilizable plasmid, GmR

[54]

 pAG136

pET28B –EGFP-YFAST, KmR promoter probe vector

[55]

 pProbe GFP [ASV]

Short-life GFP promoter probe vector, KmR

[56]

 pJEKd1750

1638-bp fragment with E.coli C IS3-csrA promoter in BglII/XbaI sites of pAG136, KmR

This work

 pJEKd1751

1638-bp fragment with E. coli C IS3-csrA promoter in SmaI site of pProbe GFP [ASV], KmR

This work

 pJEK718

csrA gene driven by the plac promoter in pBBR1MCS-5, GmR

This work

 pJEK786

csrA gene driven by the pcat promoter in pBBR1MCS-5, GmR CmR

This work

  1. Abbreviations: KmR, GmR, CmR – kanamycin, gentamycin, and chloramphenicol resistance