Unraveling the genetic architecture for carbon and nitrogen related traits and leaf hydraulic conductance in soybean using genome-wide association analyses

Table 5 SNPs associated with normalized decrease in transpiration rate (NDTR) following silver nitrate treatment

Locus^a	Chr^b	Pos^c	SNP ID	-log₁₀(P)	MAF^d	Effect^e
1	3	2,996,563	ss715585043	4.73	0.17	0.03
2	7	5,960,839	ss715598416	4.89	0.13	0.03
3	11	2,124,435	ss715609637	6.08	0.46	−0.03
4	11	12,410,973	ss715609570	4.04	0.1	−0.03
5	12	38,552,678	ss715612877	6.37	0.47	−0.02
6	14	977,674	ss715620135	4.77	0.07	−0.04
7	15	1,906,120	ss715621180	5.56	0.33	−0.02
8	18	1,112,725	ss715628511	6.96	0.36	−0.03
9	19	41,078,499	ss715635080	4.46	0.41	0.02

^a If multiple SNPs were identified in the same linkage disequilibrium (LD) block they were deemed part of the same locus (genomic region). Significant SNPs not part of the same LD block were deemed different loci controlling the trait
^b Chromosome
^c Glyma.Wm82.a2 physical position
^d Minor allele frequency
^e Allelic effects were calculated by taking the difference in mean phenotypic value between the two alleles at a particular SNP, and the direction, negative or positive, of the allelic effect estimates are relative to the alphabetical order of the nucleotides at each particular marker

ISSN: 1471-2164