Table 1 Description of GH3 family putative members identified in C. canephora through in silico analysis
Gene | Conserved domains (CDD - NCBI) | Protein length (aa) | Locus ID (Coffee Genome Hub) | Chromosome position |
|---|---|---|---|---|
CcGH3.1 | PLN02247 superfamily/GH3 | 593 | Cc00_g01360 | Chr0: 8,822,291 ... 8,824,450 |
CcGH3.2 | PLN02247 superfamily/GH3 | 583 | Cc00_g04490 | Chr0: 34,209,474 ... 34,211,882 |
CcGH3.3 | PLN02247 superfamily/GH3 | 371 | Cc00_g04500 | Chr0: 34,230,766 ... 34,211,882 |
CcGH3.4 | PLN02247 superfamily/GH3 | 583 | Cc00_g04520 | Chr0: 34,265,456 ... 34,267,828 |
CcGH3.5 | PLN02247 superfamily/GH3 | 583 | Cc00_g04530 | Chr0: 34,279,931 ... 34,282,340 |
CcGH3.6 | PLN02247 superfamily/GH3 | 357 | Cc00_g04540 | Chr0: 34,297,176 ... 34,298,627 |
CcGH3.7 | PLN02247 superfamily/GH3 | 569 | Cc00_g22520 | Chr0: 142,656,917 ... 142,659,058 |
CcGH3.8 | PLN02247 superfamily/GH3 | 348 | Cc00_g28980 | Chr0: 178,936,581 ... 178,938,006 |
CcGH3.9 | PLN02247 superfamily/GH3 | 606 | Cc01_g20620 | Chr1: 37,172,864 ... 37,175,503 |
CcGH3.10 | PLN02247 superfamily/GH3 | 271 | Cc02_g19460 | Chr2: 17,549,243 ... 17,550,429 |
CcGH3.11 | PLN02247 superfamily/GH3 | 236 | Cc02_g19470 | Chr2: 17,550,591 ... 17,551,298 |
CcGH3.12 | PLN02247 superfamily/GH3 | 399 | Cc02_g39050 | Chr2: 53,645,460 ... 53,647,471 |
CcGH3.13 | PLN02247 superfamily/GH3 | 607 | Cc05_g05640 | Chr5: 20,228,391 ... 20,230,769 |
CcGH3.14 | PLN02247 superfamily/GH3 | 591 | Cc05_g06700 | Chr5: 21,465,217 ... 21,468,524 |
CcGH3.15 | PLN02247 superfamily/GH3 | 622 | Cc05_g12940 | Chr5: 26,669,847 ... 26,672,091 |
CcGH3.16 | PLN02247 superfamily/GH3 | 528 | Cc07_g06610 | Chr7: 4,821,858 ... 4,824,041 |
CcGH3.17 | PLN02247 superfamily/GH3 | 583 | Cc10_g16320 | Chr10: 27,266,812 ... 27,269,856 |