Table 2 Differential microRNA targeting across Sc-cha-1 and Sc-vglu-2 gene isoform 5′ and 3’UTRs. D denotes number of predicted microRNA interactions following default target prediction in miRanda; S denotes number of predicted microRNA interactions following strict target prediction in miRanda. Numbers in brackets indicate the relative number of binding sites across both D and S settings
Transcript ID | Mean %Isoform abundance | N° microRNA interactions in 3’UTR (binding sites) | N° microRNA interactions in 5’UTR (binding sites) | ||||
|---|---|---|---|---|---|---|---|
ALL | UK1 | BR | D | S | D | S | |
L596_g14764.t1 | 90.9% | 90.1% | 85.8% | – | – | – | – |
L596_g14764.t2 | 7.6% | 8.3% | 12.9% | – | – | 54 (57) | 36 (36) |
L596_g14764.t3 | 1.5% | 1.6% | 1.3% | – | – | 46 (49) | 31 (31) |
L596_g5500.t1 | 75.5% | 83.9% | 65.4% | 22 (22) | 5 (5) | 6 | 4 (4) |
L596_g5500.t2 | 24.5% | 16.1% | 34.6% | – | – | 39 (49) | 25 (27) |