Skip to main content

Table 2 Differential microRNA targeting across Sc-cha-1 and Sc-vglu-2 gene isoform 5′ and 3’UTRs. D denotes number of predicted microRNA interactions following default target prediction in miRanda; S denotes number of predicted microRNA interactions following strict target prediction in miRanda. Numbers in brackets indicate the relative number of binding sites across both D and S settings

From: Transcriptional variation and divergence of host-finding behaviour in Steinernema carpocapsae infective juveniles

Transcript IDMean %Isoform abundanceN° microRNA interactions in 3’UTR (binding sites)N° microRNA interactions in 5’UTR (binding sites)
ALLUK1BRDSDS
L596_g14764.t190.9%90.1%85.8%
L596_g14764.t27.6%8.3%12.9%54 (57)36 (36)
L596_g14764.t31.5%1.6%1.3%46 (49)31 (31)
L596_g5500.t175.5%83.9%65.4%22 (22)5 (5)64 (4)
L596_g5500.t224.5%16.1%34.6%39 (49)25 (27)