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Table 2 Summary of RNA-seq and de novo transcriptome assemblies of 13 berry fruit species

From: RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Plant species

Total number of raw reads

Total transcripts

Total assembled bases of transcripts

N50 length of transcripts

Overall read mapping rate (%)

A. chilensis

397,707,372

110,619

103,522,516

1526

84.6

B. buxifolia

444,362,698

736,393

488,614,277

1569

80.3

C. album

353,604,932

262,440

224,462,635

1408

91.1

L. caerulea (S322–3)

397,214,254

189,029

156,110,849

1345

88.6

R. nigrum cv. Ben Hope

336,479,242

145,906

129,471,515

1480

90.4

R. nigrum var. sibiricum cv. Biryusinka

393,665,630

186,129

141,064,478

1223

86.2

R. genevieri

1,040,224,680

286,262

222,576,819

1217

85.5

R. idaeus cv. Octavia

505,754,030

290,768

287,835,663

2214

90.5

R. idaeus cv. Prestige

1,064,858,518

155,094

149,987,271

1701

92.0

R. vagabundus

390,608,452

103,169

105,970,136

1565

85.5

U. molinae

405,024,920

138,456

166,588,685

1952

86.7

V. corymbosum

373,159,882

128,351

125,401,104

1519

80.4

V. uliginosum

375,778,718

703,066

422,097,427

1287

82.6