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Table 3 Protein coding gene difference between mt genome of Zhongshuang 4 and Nsa CMS

From: Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

Gene

Zhongshuang 4-Nsa CMS

nucleic acida

amino acidb

Mutation type

SNP type

rpl5

515C-T

172C-R

N

transition

atp1

405C-A

N

S

transversion

1153G-A

385A-T

N

transition

ccmFN1

397C-A

133S-R

N

transversion

997C-T

333 L-F

N

transition

cox1

109C-T

N

S

transition

111 T-G

N

S

transversion

129A-G

N

S

transition

786 T-G

N

S

transversion

nad4

836C-T

279S-F

N

transition

orfX (tatC)

15C-T

N

S

transition

73C-T

25R-W

N

transition

220A-G

74I-V

N

transition

355C-T

119R-C

N

transversion

550 T-C

184C-R

N

transition

641C-T

214P-F

N

transition

rpl2

98G-A

33R-Q

N

transition

128G-A

43R-K

N

transition

845G-C

282R-T

N

transversion

ccmFN2

380 T-A

127 L-S

N

transversion

rps7

276C-T

N

S

transition

matR

1273G-A

425G-S

N

transition

1436G-A

479R-Q

N

transition

rps12

334A-C

N

S

transversion

336A-C

N

S

transversion

nad3

265 T-C

N

S

transition

  1. aLocation of base mutation
  2. bLocation of amino acid mutation
  3. S, synonymous; N, Non-synonymous