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Table 4 Protein coding gene difference among Nsa CMS, Zhongshuang 4 and S. arvensis mt genomes

From: Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

Gene

S. arvensis-Nsa CMS

B. napus-Nsa CMS

nucleic acida

amino acidb

nucleic acida

amino acidb

rpl5

–

–

515C-T

172C-R

atp1

–

–

405C-A

N

–

–

1153G-A

385A-T

ccmFN1

–

–

397C-A

133S-R

–

–

997C-T

333 L-F

nad7

1079 T-C

360F-S

–

–

rps4

711 T-C

S

–

–

nad2

367 T-C

123C-R

–

–

cox1

–

–

109C-T

S

–

–

111 T-G

S

–

–

129A-G

S

–

–

786 T-G

S

nad4

–

–

836C-T

279S-F

orfX (tatC)

–

–

15C-T

S

–

–

73C-T

25R-W

–

–

220A-G

74I-V

–

–

355C-T

119R-C

–

–

550 T-C

184C-R

–

–

641C-T

214P-F

rpl2

–

–

98G-A

33R-Q

–

–

128G-A

43R-K

–

–

845G-C

282R-T

nad5

242C-T

81P-L

–

–

ccmFN2

–

–

380 T-A

127 L-S

rps7

–

–

276C-T

S

matR

–

–

1273G-A

425G-S

–

–

1436G-A

479R-Q

rps12

–

–

334A-C

S

–

–

336A-C

S

nad3

–

–

265 T-C

S

cox2–2

379C-T

127R-W

–

–

rps3

–

–

33 bp

11AA

  1. aLocation of base mutation. bLocation of amino acid mutation. S, synonymous. -, Nsa CMS has the same DNA or amino acid sequence as B.napus or S. arvensis