Table 1 Top loci associated with conception rate to first breeding and number of breedings to conception
From: Identification of loci associated with conception rate in primiparous Holstein cows
BTA1 | BP Position2 | SNP ID3 | Model4 | CCR1 P-value5 | TBRD P-value6 | Positional Candidate Gene(s)7 | TFBS8 |
|---|---|---|---|---|---|---|---|
3 | 111,540,905 (110,948,044) | rs133945887 | Recessive | 1.33 × 10−14 | 7.25 × 10−12 | GJB5, GJB4 | – |
6 | 38,447,022 (37,013,919) | rs109381958 | Additive Dominant | 4.31 × 10−30 4.31 × 10− 30 | 4.39 × 10− 26 4.39 × 10− 26 | – | – |
6 | 93,660,111 (91,908,296) | rs132854961 | Recessive | 1.56 × 10− 14 | 8.38 × 10− 12 | CCNI, LOC101901983 | – |
8 | 29,615,889 (29,565,411) | rs134405734 | Additive Dominant | 1.42 × 10− 36 1.42 × 10− 36 | 1.25 × 10− 24 1.25 × 10− 24 | ZDHHC21 | – |
16 | 387,363 (591,660) | rs133778157 | Additive Dominant | 2.99 × 10− 33 2.99 × 10− 33 | 5.68 × 10− 28 5.68 × 10− 28 | LOC787642, LOC787620, LOC787667 | – |
16 | 10,340,087 (9,739,230) | rs137501137 | Recessive | 5.27 × 10− 14 | 1.12 × 10− 13 | – | NF-1, Cutl1 |
17 | 74,944,074 (72,930,491) | rs133921184 | Additive Dominant | 3.35 × 10−37 2.93 × 10− 37 | 2.59 × 10− 23 5.98 × 10− 22 | ARVCF, COMT | – |
20 | 23,886,196 (23,863,171) | rs41663374 | Recessive | 9.41 × 10− 17 | 1.58 × 10− 11 | DHX29, LOC107131567 | – |