Table 1 List of named species of the Leucobacter genus used in the phylogenetic and comparative studies. Assembly quality was calculated using QUAST [49] with a minimum contig size set to 200 bp. Completeness and contamination were computed with CheckM [34]. 16S rRNA pairwise similarity was computed with the global alignment tool in the EzBioCloud web server [126]
Strain | 16S rRNA pairwise similarity to GP (%) | Genome*/ assembly accession no. | Completeness (%) | Contamination (%) | Number contigs/ scaffolds | Genome size (Mb) | Contig N50 | G + C content (%) | Number of CDS | Reference |
|---|---|---|---|---|---|---|---|---|---|---|
Candidatus Leucobacter sulfamidivorax’ GP | – | QZLF00000000 | 95.91 | 0.58 | 11 | 3.84 | 956,104 | 69.68 | 3621 | This study |
L. aridicollis L-9T | 96.23 | QYAE00000000 | 99.27 | 0.58 | 8 | 3.56 | 888,847 | 67.3 | 3212 | This study |
L. celer subsp. astrifaciens CBX151T | 95.87 | GCA_001273835.1 | 98.83 | 0.00 | 235 | 4.14 | 349,813 | 69.1 | 3661 | [122] |
L. chironomi DSM 19883T | 95.43 | GCA_000421845.1 | 100.00 | 0.88 | 27 | 2.96 | 268,438 | 69.9 | 2662 | [64] |
L. chromiireducens subsp. chromiireducens L-1T | 96.23 | QYAD00000000 | 100.00 | 0.58 | 6 | 3.22 | 623,960 | 67.0 | 2843 | This study |
L. chromiireducens subsp. solipictus TAN 31504T | 96.15 | QYAC00000000 | 99.42 | 2.05 | 11 | 3.54 | 451,461 | 68.9 | 3096 | This study |
L. chromiiresistens J31T | 96.23 | GCA_000231305.1 | 100.00 | 0.00 | 2 | 3.21 | 2,823,343 | 70.3 | 2895 | [31] |
L. chromiiresistens NS354 | 96.37 | GCA_001477055.1 | 95.03 | 0.00 | 194 | 2.79 | 35,220 | 70.8 | 2423 | [142] |
L. komagatae DSM 8803T | 96.79 | GCA_006716085.1 | 98.54 | 1.75 | 2 | 3.75 | 3,292,530 | 66.6 | 3253 | Unpublished |
L. luti RF6T | 96.81 | QYAG00000000 | 100.00 | 0.58 | 5 | 3.62 | 1,858,864 | 69.4 | 3088 | This study |
L. massiliensis 122RC15T | 96.52 | GCA_002982315.1 | 100.00 | 1.75 | 24 | 3.14 | 232,656 | 71.0 | 2789 | [143] |
L. musarum subsp. japonicus CBX130T | 95.87 | GCA_001273855.1 | 99.56 | 0.58 | 144 | 3.59 | 248,155 | 66.8 | 3311 | [144] |
L. musarum subsp. musarum CBX152T | 95.87 | GCA_001273845.1 | 99.85 | 0.58 | 125 | 3.44 | 200,785 | 66.8 | 3147 | [144] |
L. salsicius M1-8T | 95.94 | GCA_000350525.1 | 99.42 | 0.00 | 28 | 3.18 | 197,637 | 64.5 | 2741 | [65] |
L. triazinivorans JW-1T | 96.4 | GCA_004208635.1 | 100.00 | 0.88 | 1 | 3.48 | – | 69.37 | 2978 | [145] |
L. zeae CC-MF41T | 95.88 | QYAB00000000 | 99.85 | 0.58 | 6 | 3.47 | 2,226,772 | 70.6 | 3042 | This study |