Skip to main content

Table 3 Essential genes missing from the draft genome of strain GP identified by core/pangenome analysis with GET_HOMOLOGUES [54]

From: Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader ‘Candidatus Leucobacter sulfamidivorax’ strain GP

 Representative accession no.   
L. chironomi DSM 19883TStrain PR1KO identifiersDescriptionPathway/System
 WP_024356349.1ASC67664.1K01476Arginase RocFL-arginine biosynthesis; Urea cycle
 WP_024355584.1AbsentK08963, K08964S-methyl-5-thioribose-1-phosphate isomerase MtnAMethionine salvage pathway
 WP_024357159.1ASC65015.1K06147, K06148, K16013, K16014Thiol reductant ABC exporter subunit CydDGlutathione; L-cysteine ABC transporter
 WP_024357158.1ASC65016.1K06148, K16012Thiol reductant ABC exporter subunit CydC
 WP_024356490.1ASC65168.1K02492Glutamyl-tRNA reductase HemAPorphyrin and chlorophyll metabolism
 WP_024356487.1ASC64797.1K01698Porphobilinogen synthase HemB
 WP_084705356.1ASC63016K01749Porphobilinogen deaminase HemC
 WP_024356489.1ASC64317.1K01599Uroporphyrinogen decarboxylase HemE
 WP_024356124.1ASC67862.1K02083, K06016Allantoate deiminase AllCPurine metabolism