Table 3 Essential genes missing from the draft genome of strain GP identified by core/pangenome analysis with GET_HOMOLOGUES [54]
Representative accession no. | ||||
|---|---|---|---|---|
L. chironomi DSM 19883T | Strain PR1 | KO identifiers | Description | Pathway/System |
WP_024356349.1 | ASC67664.1 | K01476 | Arginase RocF | L-arginine biosynthesis; Urea cycle |
WP_024355584.1 | Absent | K08963, K08964 | S-methyl-5-thioribose-1-phosphate isomerase MtnA | Methionine salvage pathway |
WP_024357159.1 | ASC65015.1 | K06147, K06148, K16013, K16014 | Thiol reductant ABC exporter subunit CydD | Glutathione; L-cysteine ABC transporter |
WP_024357158.1 | ASC65016.1 | K06148, K16012 | Thiol reductant ABC exporter subunit CydC | |
WP_024356490.1 | ASC65168.1 | K02492 | Glutamyl-tRNA reductase HemA | Porphyrin and chlorophyll metabolism |
WP_024356487.1 | ASC64797.1 | K01698 | Porphobilinogen synthase HemB | |
WP_084705356.1 | ASC63016 | K01749 | Porphobilinogen deaminase HemC | |
WP_024356489.1 | ASC64317.1 | K01599 | Uroporphyrinogen decarboxylase HemE | |
WP_024356124.1 | ASC67862.1 | K02083, K06016 | Allantoate deiminase AllC | Purine metabolism |