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Table 1 RNA-seq reads per sample. The number of total reads sequenced from each sample and the number of which mapped to the T. gondii genome

From: Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts

Sample Type

DPI

Replicate ID

Input Reads

Toxo Reads

% Toxo

Reference

Tachyzoites

0

1

25837455

11650902

45.09

This Study

2

18310484

15269361

83.39

This Study

Whole Brain

10

1

102581171

116278

0.11

[6]

2

125546828

97611

0.08

[6]

3

81630704

51309

0.06

[6]

Whole Brain

28

1

103765423

167181

0.16

[6]

2

113094439

137975

0.12

[6]

3

114177191

162423

0.14

[6]

Bradyzoites

28

A

40656512

21075587

51.84

This Study

C

39129732

36606828

93.55

This Study

Bradyzoites

90

A

37700412

35412305

93.93

This Study

B

41174415

25965460

63.06

This Study

Bradyzoites

120

B

46857160

40734629

86.93

This Study

C

45074363

34443785

76.42

This Study