Table 2 List of genes within chloroplast genomes of six Hosta species in Korea. ×2 refers to genes duplicated in the IR regions

Transcription & Translation

Ribosomal protein, LSU

rpl33, rpl20, rpl36, rpl14, rpl16 (× 2)^a, rpl22, rpl2(× 2)^a, rpl23(× 2), rpl32

Ribosomal protein, SSU

rps16, rps2, rps14, rps4, rps18, rps12(× 2)^a, rps11, rps8, rps3, rps19(× 2), rps7(× 2), rps15

RNA polymerase

rpoC2, rpoC1^a, rpoB, rpoA

Ribosomal RNAs

rrn16(×2), rrn23(× 2), rrn4.5(× 2), rrn5(× 2)

Transfer RNAs

trnL-UAA^a, trnF-GAA, trnV-UAC^a, trnM-CAU, trnW-CCA, trnP-UGG, trnH-GUG(×2), trnI-CAU(× 2), trnL-CAA(× 2), trnV-GAC(× 2), trnI-GAU(× 2)^a, trnA-UGC(× 2)^a, trnR-ACG(× 2), trnN-GUU(× 2), trnL-UAG, trnR-UCU, trnD-GUC, trnC-GCA, trnQ-UUG, trnE-UUC, trnG-UCC, trnK-UUU^a, trnfM-CAU, trnS-GCU, trnS-UGA, trnS-GGA, trnT-GGU, trnT-UGA, trnY-GUA, trnG-GCC^a, trnT-UGU

Photosynthesis

Photosystem I

psaB, psaA, psaI, psaJ, psaC

Photosystem II

psbA, psbK, psbI, psbM, psbD, psbC, psbZ, psbJ, psbL, psbF, psbE, psbB, psbT, psbN, psbH, petN

NADH dehydrogenase

ndhJ, ndhK, ndhC, ndhB(×2)^a, ndhF, ndhD, ndhE, ndhG, ndhI, ndhA^a, ndhH

Cytochrome b6/f complex

petN, petA, petL, petG, petB^a, petD^a

ATP synthase

atpA, atpF^a, atpH, atpI, atpE, atpB

Rubisco large subunit

rbcL

clpP^a

Other genes

Chloroplast envelope membrane protein

cemA

Maturase

matK

c-type

ccsA

Subunit Acetyl- CoA-Carboxylate

accD

Photosystem I assembly& stability

ycf3^b, ycf4

ycf1, ycf2(×2)

infA^ψ (MIN/CAP), ycf15^ψ (MIN/CAP), rps16^ψ (JON), rps11^ψ (JON)