Skip to main content

Table 1 Gene Ontology categories significantly enriched in DEGs at 2 dpi in the infection caused by Fusarium in vanilla

From: Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

DEGs

GO term

Ontology

Description

p-value

FDR

Up-Regulated

GO:0006412

P

translation

2.90E-41

2.10E-38

GO:0034645

P

cellular macromolecule biosynthetic process

6.50E-29

1.90E-26

GO:0009058

P

biosynthetic process

7.90E-29

1.90E-26

GO:0009059

P

macromolecule biosynthetic process

1.00E-28

1.90E-26

GO:0044249

P

cellular biosynthetic process

2.80E-28

4.00E-26

GO:0019538

P

protein metabolic process

1.10E-26

1.30E-24

GO:0010467

P

gene expression

1.80E-24

1.90E-22

GO:0044267

P

cellular protein metabolic process

2.70E-24

2.40E-22

GO:0044238

P

primary metabolic process

4.00E-24

3.20E-22

GO:0043170

P

macromolecule metabolic process

6.60E-21

4.70E-19

GO:0008152

P

metabolic process

1.40E-20

9.10E-19

GO:0044260

P

cellular macromolecule metabolic process

4.40E-19

2.60E-17

GO:0044237

P

cellular metabolic process

3.40E-17

1.90E-15

GO:0009987

P

cellular process

1.60E-16

8.30E-15

GO:0042254

P

ribosome biogenesis

2.70E-16

1.30E-14

GO:0022613

P

ribonucleoprotein complex biogenesis

6.60E-16

3.00E-14

GO:0044085

P

cellular component biogenesis

4.40E-11

1.80E-09

GO:0009791

P

post-embryonic development

3.90E-06

0.00016

GO:0003735

F

structural constituent of ribosome

4.20E-57

1.40E-54

GO:0005198

F

structural molecule activity

5.20E-50

8.30E-48

GO:0008135

F

translation factor activity, nucleic acid binding

1.20E-07

1.30E-05

GO:0003746

F

translation elongation factor activity

6.10E-07

4.90E-05

GO:0022626

C

cytosolic ribosome

4.60E-65

1.00E-62

GO:0044445

C

cytosolic part

1.00E-57

1.10E-55

GO:0033279

C

ribosomal subunit

5.50E-56

4.10E-54

GO:0005840

C

ribosome

1.20E-55

6.50E-54

GO:0030529

C

ribonucleoprotein complex

2.00E-48

8.80E-47

GO:0043232

C

intracellular non-membrane-bounded organelle

3.70E-45

1.20E-43

GO:0043228

C

non-membrane-bounded organelle

3.70E-45

1.20E-43

GO:0005829

C

cytosol

3.90E-43

1.10E-41

GO:0022625

C

cytosolic large ribosomal subunit

3.20E-40

7.70E-39

GO:0015934

C

large ribosomal subunit

1.10E-35

2.40E-34

GO:0044422

C

organelle part

3.30E-30

6.00E-29

GO:0044446

C

intracellular organelle part

3.20E-30

6.00E-29

GO:0032991

C

macromolecular complex

7.00E-27

1.20E-25

GO:0022627

C

cytosolic small ribosomal subunit

1.20E-22

1.80E-21

GO:0015935

C

small ribosomal subunit

1.10E-20

1.60E-19

GO:0044444

C

cytoplasmic part

2.30E-19

3.20E-18

GO:0005737

C

cytoplasm

2.80E-18

3.70E-17

GO:0005730

C

nucleolus

2.70E-16

3.20E-15

GO:0043229

C

intracellular organelle

4.40E-14

4.90E-13

GO:0005622

C

intracellular

4.40E-14

4.90E-13

GO:0043226

C

organelle

4.70E-14

4.90E-13

GO:0031981

C

nuclear lumen

1.00E-13

1.00E-12

GO:0044424

C

intracellular part

2.70E-13

2.60E-12

GO:0043233

C

organelle lumen

2.20E-12

1.90E-11

GO:0070013

C

intracellular organelle lumen

2.20E-12

1.90E-11

GO:0044428

C

nuclear part

2.50E-12

2.10E-11

GO:0031974

C

membrane-enclosed lumen

2.80E-12

2.30E-11

GO:0044464

C

cell part

1.80E-08

1.30E-07

GO:0005623

C

cell

1.80E-08

1.30E-07

GO:0016020

C

membrane

7.70E-07

5.60E-06

Down-Regulated

GO:0042545

P

cell wall modification

2.20E-06

0.00088

GO:0009664

P

plant-type cell wall organization

1.40E-06

0.00088

GO:0044262

P

cellular carbohydrate metabolic process

4.70E-06

0.001

GO:0005975

P

carbohydrate metabolic process

5.00E-06

0.001

GO:0005976

P

polysaccharide metabolic process

9.60E-06

0.0016

GO:0006260

P

DNA replication

1.60E-05

0.0021

GO:0009827

P

plant-type cell wall modification

2.70E-05

0.0032

GO:0060918

P

auxin transport

5.70E-05

0.0055

GO:0009914

P

hormone transport

6.20E-05

0.0055

GO:0003824

F

catalytic activity

1.30E-06

0.00031

GO:0016757

F

transferase activity, transferring glycosyl groups

7.00E-05

0.0075

GO:0016758

F

transferase activity, transferring hexosyl groups

9.50E-05

0.0075

GO:0030312

C

external encapsulating structure

6.70E-07

4.70E-05

GO:0005618

C

cell wall

5.90E-07

4.70E-05

GO:0031225

C

anchored to membrane

9.00E-05

0.0042

  1. In the table the Gene Ontology (GO) terms that are significantly (q ≤ 0.05) overrepresented using AgriGO V2 are observed. P corresponds to Biological Process, C corresponds to Cellular Component, and F corresponds to Molecular Function