Promising prospects of nanopore sequencing for algal hologenomics and structural variation discovery

BMC Genomics

Table 1 Flow cell output

Flow Cell: Library	1Df	1Dr	1Df + 1Dr	2D
FAB29720: Lib_RAW	11,784	6622	18,406	1486
FAB29720: Lib_RAW	22.9 Mbp	10.2 Mbp	33.1 Mbp	2.6 Mbp
FAB38981: Lib_GEL	90,189	47,119	137,308	18,557
FAB38981: Lib_GEL	296.4 Mbp	114.4 Mbp	410.8 Mbp	73.2 Mbp
Lib_MAG	91,503	40,148	131,651	17,843
Lib_MAG	245.6 Mbp	66.5 Mbp	312.1 Mbp	47.9 Mbp
Total	181,692	87,267	268,959	36,400
Total	542 Mbp	180.9 Mbp	722.9 Mbp	121.1 Mbp
Grand Total	193,476	93,889	287,365	37,886
Grand Total	564.9 Mbp	191.1 Mbp	756 Mbp	123.7 Mbp
Filtered Total	143,797	51,687	195,484	32,177
Filtered Total	540.1 Mbp	175.8 Mbp	715.9 Mbp	120.1 Mbp

Number of reads and cumulative length generated per read class, library and flow cell. Filtered 1Df and 2D reads (> 1000 bp) were used for nanopore or hybrid assembly

ISSN: 1471-2164