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Table 2 Read counts, relative abundance and coverage per genomic compartment and dataset

From: Promising prospects of nanopore sequencing for algal hologenomics and structural variation discovery

 

1Df

2D

Illumina PE

CP

28,530

8157

7,732,624

29.85%

31.56%

31.28%

814.7X (± 176.2X)

214.9X (± 42.1X)

7411.2X (± 1177X)

MT

1937

511

742,149

2.03%

1.98%

3.00%

41.9X (± 27.2X)

10.5X (± 12.2X)

1084.9X (± 258X)

BACT

49,630

13,786

11,094,869

51.93%

53.34%

44.89%

5.6X (± 7.7X)

3.2X (± 3.5X)

160.0X (± 285X)

NU

15,466

3390

5,148,292

16.18%

13.12%

20.83%

1.6X (± 1.8X)

1.1X (± 1.1X)

61.2X (± 70X)

  1. Read counts and mean coverage were determined via mapping on the curated chloroplast and mitochondrion genomes or the hybrid 1Df assembly for the nuclear and bacterial compartments. Relative abundance was computed from total read counts for a given dataset. Mapping of nanopore data was conducted with filtered reads (> 1000 bp). Numbers in parenthesis represent coverage standard deviation. Note the low/uneven coverage of the larger nuclear and bacterial genomes. Genome abbreviation as follows, CP = Chloroplast, MT = Mitochondrion, BACT = Bacterial, NU = Nuclear
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BMC Genomics

ISSN: 1471-2164

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