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Table 3 Nuclear and bacterial assembly statistics

From: Promising prospects of nanopore sequencing for algal hologenomics and structural variation discovery

 

1Df

2D

Illum. PE

PE+1Df

PE+2D

BACT

N

191

118

1696

1345

1507

 

N50

116,795

21,123

35,746

53,173

45,151

Cumul.

5,461,181

2,185,020

20,445,029

20,615,409

20,573,366

Repeat

NA

NA

1,282,564

1,376,748

1,251,224

NU

N

13

NA

1192

996

1178

 

N50

9441

NA

63,565

79,506

63,762

Cumul.

107,981

NA

24,338,140

24,479,301

24,335,225

Repeat

NA

NA

1,938,682

2,093,744

1,904,094

  1. Statistics include the number of Canu contigs/Spades scaffolds (N) and their cumulative assembled length (in bp), computed N50 (in bp), and assembled repeat content (in bp) estimated by RepeatModeler and TRF. BACT = Bacterial, NU=Nuclear, PE = Illumina Paired-Ends, NA = not available