From: Promising prospects of nanopore sequencing for algal hologenomics and structural variation discovery
Assembly | Tool | % Identity | % Indels | % Substitutions |
---|---|---|---|---|
CP 1Df | Canu | 96.278 (96.907) | 3.615 (3.087) | 0.107 (0.006) |
Racon | 97.418 (97.777) | 2.489 (2.186) | 0.093 (0.037) | |
Nanopolish | 99.622 (99.721) | 0.365 (0.265) | 0.013 (0.015) | |
Pilon | 99.929 (100.00) | 0.068 (0.000) | 0.003 (0.000) | |
CP 2D | Canu | 97.951 (98.344) | 2.017 (1.654) | 0.032 (0.002) |
Racon | 98.184 (98.488) | 1.785 (1.496) | 0.031 (0.016) | |
Nanopolish | 99.602 (99.707) | 0.403 (0.279) | 0.006 (0.015) | |
Pilon | 99.931 (100.00) | 0.066 (0.000) | 0.003 (0.000) | |
MT 1Df | Canu | 92.741 (95.767) | 6.774 (4.082) | 0.485 (0.158) |
Racon | 93.133 (95.809) | 4.998 (3.131) | 1.869 (1.107) | |
Nanopolish | 98.165 (98.841) | 1.190 (0.719) | 0.645 (0.445) | |
Pilon | 99.725 (99.883) | 0.183 (0.056) | 0.092 (0.061) | |
MT 2D | – | – | – | – |