Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum

Table 3 Annotation of photoperiod pathway-related DEGs identified in pairwise comparisons of stages in developmental aerial stem-to-rhizome transition of Gynostemma pentaphyllum

Gene ID	Gene name	log₂ Fold Change			Annotation
Gene ID	Gene name	Stage 1 vs Stage 2	Stage 2 vs Stage 3	Stage 1 vs Stage 3	Annotation
c62585.graph_c0	GpPHYA	0.65	0.85	1.48^a	Phytochrome A
c47576.graph_c0	GpCOL-a	−0.66	− 0.90	−1.58^a	CONSTANS-like
c47991.graph_c0	GpCOL-b	−0.02	−1.08^a	−1.18^a	CONSTANS-like
c48345.graph_c0	GpCOL-c	1.00	0.50	1.64^a	CONSTANS-like
c49299.graph_c0	GpCOL-d	−1.05^a	−0.18	−1.26^a	CONSTANS-like
c50325.graph_c0	GpCOL-e	1.17^a	2.03^a	3.20^a	CONSTANS-like
c52252.graph_c0	GpCOL-f	−0.47	−1.50^a	−2.12^a	CONSTANS-like
c53693.graph_c0	GpCOL-g	−0.63	−1.87^a	− 2.62^a	CONSTANS-like
c62923.graph_c1	GpCDF	−1.68^a	−0.18	−1.95^a	Cyclic dof factor
c51745.graph_c0	GpFKF1	−0.15	1.65^a	1.55^a	Flavin-binding kelch repeat F-box protein 1

ISSN: 1471-2164