Table 1 Gene contents and functional classification of cv Tombul chloroplast genome
Category | Group of genes | Code of genes | List of genes |
|---|---|---|---|
Genes for photosynthesis | Subunits of ATP synthase | atp | atpA, atpB, atpE, atpF, atpH, atpI |
Subunits of NADH-dehydrogenase | ndh | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
Subunits of cytochrome b/f complex | pet | petD, petG, petL, petN | |
Subunits of photosystem I | psa | psaA, psaB, psaC, psaI, psaJ | |
Subunits of photosystem II | psb | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
Subunit of rubisco | rbc | rbcL | |
Self-replication | Large subunit of ribosome | rpl | rpl2,rpl14,rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 |
DNA dependent RNA polymerase | rpo | rpoA, rpoB, rpoC1, rpoC2 | |
Small subunit of ribosome | rps | rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps16, rps18, rps19 | |
rRNA Genes | rrn | rrn4.5S, rrn5S, rrn16S, rrn23S | |
tRNA Genes | trn | trnC-GCA, trnD-GTC, trnE-TTC, trnF-GAA, trnfM-CAT, trnG-GCC, trnH-GTG, trnM-CAT, trnP-TGG, trnQ-TTG, trnR-TCT, trnS-GCT, trnS-GGA, trnS-TGA, trnT-GGT, trnT-TGT, trnW-CCA, trnY-GTA, trnL-TAG, trnI-CAT, trnI-GAT, trnL-CAA, trnN-GTT, trnR-ACG, trnV-GAC | |
Other genes | Subunit of Acetyl-CoA-carboxylase | acc | accD |
c-type cytochrome synthesis gene | ccs | ccsA | |
Envelop membrane protein | cem | cemA | |
Protease | clp | clpP | |
Maturase | mat | matK | |
Genes of unkown function | Conserved open reading frames | ycf | ycf1, ycf2, ycf3, ycf4 |