Table 7 Seed-related QTLs detected in F2 population of E. sibiricus and a comparative genome analysis with Barley and Wheat
Traits | Year | LG | Position (cM) | Markers | LOD | PVE (%) | Barley | Wheat | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chromosome | Start | End | Chromosome | Start | End | |||||||
SL | 2016 | 2 | 132.789 | Marker17770 | 3.23 | 6.77 | 2 | 525,430,014 | 525,434,447 | 2B | 166,265,395 | 173,154,799 |
2017 | 14 | 86.897 | Marker46836 | 3.90 | 7.63 | 7 | 201,764,340 | 201,764,390 | 7D | 15,895 | 15,962 | |
2018 | 14 | 86.897 | Marker46836 | 3.69 | 8.17 | 7 | 201,764,340 | 201,764,390 | 7D | 15,895 | 15,962 | |
FN | 2016 | 8 | 25.833 | Marker37873 | 4.16 | 8.22 | 2 | 561,040,849 | 561,040,930 | 3D | 88,006,199 | 88,006,346 |
2017 | 6 | 67.613 | Marker27141 | 3.87 | 7.89 | 5 | 133,194,102 | 133,194,508 | 1B | 6,358,937 | 6,359,405 | |
SS | 2016 | 6 | 22.431 | Marker124682 | 3.37 | 8.32 | 3 | 289,212,195 | 289,212,280 | 7B | 191,525,193 | 191,525,496 |
SSD | 2017 | 3 | 55.356 | Marker42714 | 3.04 | 3.50 | 2 | 468,824,875 | 468,825,323 | IWGSC_CSS_6DL _scaff_3270696 | 185 | 592 |
11 | 117.581 | Marker358832 | 3.74 | 9.48 | ||||||||
SSC | 2016 | 11 | 59.219 | Marker144585 | 3.13 | 6.94 | 5 | 74,138,678 | 74,519,101 | 3B | 207,900,333 | 300,351,070 |
2017 | 2 | 104.222 | Marker147448 | 3.14 | 7.27 | 1 | 168,916,378 | 169,305,775 | 6A | 182,509,526 | 201,508,821 | |
3 | 76.328–77.328 | Marker5164 | 3.09 | 2.17 | 5 | 271,933,595 | 271,994,082 | 3B | 521,637,350 | 532,583,969 | ||
Marker18220 | 6B | 105,011,872 | 105,011,972 | |||||||||
Marker159117 | 1A | 229,214,595 | 229,214,680 | |||||||||
AL | 2016 | 1 | 4.286 | Marker126869 | 5.63 | 10.37 | 1 | 167,306,197 | 167,306,286 | 4A | 169,140,642 | 202,332,198 |
5 | 13.755 | Marker43872 | 3.48 | 5.71 | ||||||||
6 | 32.507 | Marker36805 | 3.00 | 4.70 | 1H_unordered | 6,651,693 | 6,651,781 | 5B | 50,717,504 | 173,868,037 | ||
11 | 99.908 | Marker115159 | 3.10 | 5.96 | 6B | 19,131,019 | 19,131,091 | |||||
2017 | 1 | 183.45 | Marker170807 | 4.12 | 7.66 | 3 | 255,290,836 | 255,290,962 | IWGSC_CSS_5DS _scaff_2780361 | 9985 | 10,253 | |
2018 | 1 | 183.45 | Marker170807 | 4.80 | 9.60 | 3 | 255,290,836 | 255,290,962 | IWGSC_CSS_5DS _scaff_2780361 | 9985 | 10,253 | |
13 | 110.648 | Marker78024 | 3.33 | 7.73 | 1H_unordered | 3,661,356 | 3,661,808 | 7D | 139,977,810 | 147,025,902 | ||
WS | 2017 | 5 | 89.494 | Marker83614 | 3.43 | 6.34 | ||||||
12 | 27.128 | Marker9523 | 3.59 | 10.85 | 1 | 406,764,725 | 406,764,825 | 7A | 176,324,811 | 176,324,911 | ||
2018 | 12 | 0–1 | Marker74289 | 10.62 | 4.63 | |||||||
Marker14232 | 6 | 305,405,950 | 305,723,291 | 6D | 14,745,809 | 79,835,131 | ||||||
Marker78094 | 7 | 150,597,839 | 150,598,042 | 2B | 312,751,553 | 312,751,613 | ||||||
Marker194422 | 5 | 10,598,527 | 10,599,030 | IWGSC_CSS_5AS _scaff_1534198 | 2678 | 3168 | ||||||
SW1 | 2016 | 9 | 172.925–173.425 | Marker71571 | 3.78 | 9.10 | 7 | 248,346,134 | 248,346,234 | 3A | 112,164,566 | 113,254,286 |
Marker269877 | 3 | 406,889,670 | 406,889,761 | 3B | 43,676,691 | 43,677,121 | ||||||
Marker103013 | 2HS_unordered | 334,091 | 334,191 | 2D | 120,033,794 | 125,789,378 | ||||||
Marker114890 | 2 | 551,173,341 | 551,173,439 | 3B | 65,016,288 | 65,016,388 | ||||||
Marker83710 | 2B | 97,262,681 | 97,262,764 | |||||||||
Marker16854 | 1 | 308,951,091 | 308,951,574 | 7D | 187,064,140 | 187,064,237 | ||||||
Marker150167 | 7B | 130,188,660 | 130,189,144 | |||||||||
10 | 59.903 | Marker146504 | 3.57 | 4.75 | 6A | 168,554,803 | 168,554,905 | |||||
2017 | 4 | 73.78 | Marker64733 | 4.43 | 6.24 | 4 | 289,745,492 | 289,745,569 | 1D | 61,289,255 | 102,398,709 | |
7 | 33.751 | Marker39194 | 3.89 | 8.17 | 4A | 179,051,368 | 179,051,906 | |||||
9 | 179.183 | Marker220020 | 3.09 | 5.68 | ||||||||
Marker127996 | 7 | 228,688,948 | 228,688,991 | 1D | 63,473,969 | 70,540,158 | ||||||
2018 | 7 | 33.751 | Marker39194 | 3.61 | 7.72 | 4A | 179,051,368 | 179,051,906 | ||||
9 | 0.75 | Marker147559 | 3.25 | 3.26 | 5 | 484,748,382 | 484,748,419 | 5D | 101,712,306 | 101,712,696 | ||
Marker211648 | ||||||||||||
Marker307331 | 5 | 335,768,023 | 335,768,120 | 6B | 157,240,266 | 157,240,367 | ||||||
12 | 17.107 | Marker34249 | 3.56 | 8.13 | 5 | 62,560,678 | 62,560,749 | 5D | 146,115,303 | 146,115,379 | ||