Table 1 General characteristics of the complete S. bongori RKS3044 genome
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,394,500 | 100% of total genome |
DNA coding (bp) | 3,859,991 | 87.84% of total genome |
DNA G + C (bp) | 2,258,648 | 51.40% of total genome |
Total predicted genes | 4121 | 87.84% of total genome |
Protein coding genes | 4017 | 97.48% of total genes |
RNA genes | 22 | 0.53% of total genes |
Pseudo genes | 77 | 1.87% of total genes |
Genes in internal clusters | 2847 | 69.09% of total genes |
Genes with function prediction | 3563 | 86.46% of total genes |
Genes assigned to COGs | 3066 | 74.40% of total genes |
Genes with Pfam domains | 2449 | 68.54% of total genes |
Genes with signal peptides | 378 | 9.17% of total genes |
Genes with transmembrane helices | 1023 | 24.82% of total genes |
CRISPR repeats | 2 | Â |