Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs

BMC Genomics

Table 1 Comparison of RNA-seq and qPCR data

Ssc gene symbol	Ssc Entrez gene ID	Hsa gene symbol	Hsa Entrez gene ID	Hsa gene description	log2 FC P/C						FDR (RNA-seq) / P-value (qPCR)
					RNA-seq					qPCR	RNA-seq					qPCR
					LE	GE	BV	S	Complete		LE	GE	BV	S	Complete
DEFB1	404699	DEFB1	1672	defensin beta 1	−4.1				−3.9	−3.4	0.000				0.000	0.010
FGF9	396717	FGF9	2254	fibroblast growth factor 9	3.4	2.0			2.6	3.0	0.000	0.000			0.000	< 0.001
IRF1	396611	IRF1	3659	interferon regulatory factor 1	0.8	1.9	0.7	1.8	3.3	2.9	0.045	0.000	0.023	0.000	0.000	0.003
PLP1	397029	PLP1	5354	proteolipid protein 1					8.3	7.5					0.000	< 0.001
S100A9	100127489	S100A9	6280	S100 calcium binding protein A9	13.4			8.9	9.1	9.2	0.000			0.000	0.000	< 0.001
SERPINB7	100152588	SERPINB7	8710	serpin family B member 7	6.3			6.7	4.5	5.4	0.000			0.000	0.000	0.018
SPP1	397087	SPP1	6696	secreted phosphoprotein 1	0.0	1.0	−1.3	−1.1	3.6	3.2	0.987	0.036	0.002	0.017	0.000	0.029
STAT1	396655	STAT1	6772	signal transducer and activator of transcription 1	0.7	0.8	0.2	1.0	2.7	2.3	0.029	0.085	0.432	0.008	0.000	< 0.001
CLDN10	100153752	CLDN10	9071	claudin 10		−0.5			−0.6	−0.5		0.196			0.009	0.089
CLDN11	100302016	CLDN11	5010	claudin 11				1.6	0.6	0.1				0.000	0.084	0.506
HPGD	100156186	HPGD	3248	15-hydroxyprostaglandin dehydrogenase	−2.7	4.2	0.4	−1.0	−0.9	−1.3	0.000	0.000	0.241	0.015	0.000	0.055
LOC102161418	102161418	IFITM1	8519	interferon-induced transmembrane protein 1-like	−1.2		1.0	0.2	−0.6	0.4	0.006		0.005	0.675	0.007	0.195
PAQR5	100521597	PAQR5	54852	progestin and adipoQ receptor family member 5	0.9	1.8			0.4	0.3	0.073	0.000			0.072	0.195
STC1	100125345	STC1	6781	stanniocalcin 1	4.2			3.0	2.1	2.0	0.000			0.000	0.000	0.017

ISSN: 1471-2164