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Table 4 Runtime comparison in seconds

From: LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules

 

Human-yeast networks

Human-fly networks

Yeast-fly networks

NetworkBLAST

93321

12728

567

AlignMCL

975

325

34

LocalAli

193

206

112

LePrimAlign

4101

2522

830

  1. For the proposed method LePrimAlign, the PrimAlign score threshold θ of 1 was used for aligning human-yeast PPI networks and human-fly PPI networks and 0.1 was used for aligning yeast-fly PPI networks
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BMC Genomics

ISSN: 1471-2164

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