Table 2 Distribution of SNPs obtained from the Soy6K SNP Infinium Chips, average distance between SNPs within each chromosome, average minor allele frequency, average percentage of heterozygous SNP, and average percentage of missing data per SNP
Chromosome | SNP_ Number | Average_distance_betweenSNP (kb) | MAF(%)a | H(%)b | Missing(%)c |
|---|---|---|---|---|---|
1 | 159 | 352 | 19.17 | 9.21 | 4.79 |
2 | 254 | 223 | 23.51 | 9.72 | 5.30 |
3 | 194 | 267 | 22.65 | 9.40 | 5.15 |
4 | 190 | 286 | 24.25 | 9.43 | 5.09 |
5 | 194 | 239 | 23.38 | 10.02 | 5.10 |
6 | 205 | 275 | 19.96 | 9.23 | 4.38 |
7 | 215 | 189 | 16.72 | 8.39 | 4.67 |
8 | 225 | 208 | 21.98 | 8.21 | 4.57 |
9 | 191 | 274 | 24.80 | 8.93 | 5.03 |
10 | 216 | 280 | 23.78 | 9.57 | 5.37 |
11 | 144 | 266 | 16.14 | 7.57 | 4.16 |
12 | 174 | 256 | 21.48 | 8.52 | 4.79 |
13 | 262 | 201 | 21.01 | 9.64 | 4.86 |
14 | 196 | 302 | 21.91 | 9.80 | 4.59 |
15 | 235 | 119 | 24.24 | 10.76 | 5.60 |
16 | 165 | 227 | 22.76 | 9.43 | 5.35 |
17 | 197 | 235 | 22.44 | 10.23 | 5.13 |
18 | 269 | 291 | 18.81 | 8.91 | 4.93 |
19 | 200 | 279 | 21.23 | 8.58 | 5.02 |
20 | 204 | 260 | 21.24 | 10.50 | 5.27 |