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Table 5 Marker-assisted selection accuracy and efficiency for the significant SNPs associated with leaf chlorophyll content under SCN infestation

From: Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance

 

Selection_accuracy_(%)a

Selection_efficiency_(%)b

Favorable_allelec

Gm02_207,506_A_G

48.08

32.26

A

Gm02_2,246,479_A_G

66.67

42.50

G

Gm03_36,634,361_G_A

50.49

33.77

G

Gm05_39,995,603_C_T

51.02

33.56

C

Gm06_50,593,128_T_G

60.29

39.42

T

Gm07_11,956,773_T_C

50.00

34.02

C

Gm10_6,196,864_T_G

63.16

41.38

G

Gm13_39,378,998_G_A

54.37

35.44

G

Gm14_49,357,738_A_G

46.00

30.87

A

Gm15_43,797,502_G_T

68.18

45.45

T

Gm18_1,620,585_T_C

41.18

26.72

T

Gm19_38,917,571_A_G

53.85

34.43

A

Gm19_39,863,286_G_T

45.71

45.00

G

Gm19_48,074,289_A_C

85.11

60.61

C

  1. aSelection accuracy = 100*[(Number of genotypes having high leaf chlorophyll content with the favorable SNP allele)/(Number of genotypes having high leaf chlorophyll content with the favorable SNP allele + Number of genotypes having low leaf chlorophyll content with the favorable SNP allele)
  2. bSelection efficienty = 100*[(Number of genotypes having high leaf chlorophyll content with the favorable SNP allele)/(Total number of genotypes having the favorable SNP allele)]
  3. cFavorable allele corresponds to the allele with the highest frequency in the top 57 genotypes having the highest chlorophyll content under SCN infestation
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BMC Genomics

ISSN: 1471-2164

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