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Table 6 Marker-assisted selection accuracy and efficiency for the significant SNPs associated with decrease in leaf chlorophyll content under SCN infestation

From: Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance

 

Selection_accuracy_(%)a

Selection_efficiency_(%)b

Favorable_allelec

Gm02_6,340,233_C_A

53.40

35.03

C

Gm03_3,334,303_C_A

44.07

29.55

A

Gm03_39,574,966_T_C

60.71

37.36

C

Gm04_5,172,181_A_G

61.54

41.67

A

Gm06_16,315,206_A_G

57.14

37.33

A

Gm06_50,593,128_T_G

60.29

39.42

T

Gm07_35,908,169_T_C

57.33

35.54

C

Gm08_9,848,168_T_C

50.96

33.13

T

Gm08_10,116,360_C_T

51.46

33.54

C

Gm08_11,501,419_A_C

50.00

33.54

A

Gm08_43,787,988_G_A

55.68

35.77

G

Gm09_6,664,095_T_C

47.06

31.17

C

Gm13_5,211,326_T_C

47.37

33.33

C

Gm13_39,378,998_G_A

54.37

35.44

G

Gm15_43,797,502_G_T

68.18

45.45

T

Gm18_1,427,298_G_T

53.33

34.78

G

  1. aSelection accuracy = 100*[(Number of genotypes having the lowest decrease in leaf chlorophyll content with the favorable SNP allele)/(Number of genotypes having the lowest decrease in leaf chlorophyll content with the favorable SNP allele + Number of genotypes having the highest leaf chlorophyll content with the favorable SNP allele)
  2. bSelection efficienty = 100*[(Number of genotypes having the lowest decrease in leaf chlorophyll content with the favorable SNP allele)/(Total number of genotypes having the favorable SNP allele)]
  3. cFavorable allele corresponds to the allele with the highest frequency in the top 57 genotypes having the decrease in leaf chlorophyll content under SCN infestation
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BMC Genomics

ISSN: 1471-2164

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