Table 5 General statistics of predicted protein-coding genes
Gene set | Number | Average transcript length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
De novo | SNAP | 76,858 | 42,227.63 | 742.83 | 5.52 | 134.62 | 9182.18 |
AUGUSTUS | 24,675 | 19,838.68 | 1133.22 | 5.61 | 201.97 | 4056.79 | |
GENESCAN | 49,390 | 24,183.55 | 1023.1 | 6.25 | 163.54 | 4406.54 | |
Homolog | Meriones unguiculatus (10) | 38,750 | 31,095 | 1809 | NA | 262 | 3803 |
Mus musculus | 22,728 | 26,977.32 | 1465.18 | 8.02 | 182.61 | 3632.46 | |
Rattus norvegicus | 23,686 | 23,564.96 | 1336.56 | 7.43 | 179.83 | 3455.8 | |
Homo sapiens | 17,131 | 31,217.18 | 1580.27 | 9.11 | 173.55 | 3656.27 | |
GLEAN | 19,893 | 18,835.39 | 1418.26 | 7.72 | 183.69 | 2691.49 | |
Transcriptome | 36,019 | 33,752.29 | 1758.58 | 10.74 | 163.77 | 3285.43 | |
Final set | 22,998 | 23,846.58 | 1535.48 | 7.76 | 197.9 | 3300.83 | |