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Table 2 Gene rank comparison

From: StressGenePred: a twin prediction model architecture for classifying the stress types of samples and discovering stress-related genes in arabidopsis

Stress type

Gene name

Gene symbol

Our method

Fisher method

Heat

AT1G74310

ATHSP101

2

11

 

ATMG00650

NAD4L

5

44

 

AT4G10250

ATHSP22.0

11

9

 

AT4G27670

HSP21

12

7

 

AT1G16030

Hsp70b

14

16

 

AT2G32120

HSP70T-2

16

22

 

AT4G25200

ATHSP23.6-MI

17

3

 

ATMG00070

NAD9

19

54

 

AT5G09590

MTHSC70-2

26

51

 

AT5G12020

HSP17.6II

34

1

 

AT5G37670

 

36

21

 

AT2G26150

HSFA2

40

27

Cold

AT1G09350

AtGolS3

3

1

 

AT1G46768

RAP2.1

4

29

 

AT2G16890

 

18

16

 

AT5G17030

UGT78D3

21

68

 

AT4G38580

FP6

28

35

 

AT2G31360

ADS2

35

116

 

AT1G23020

FRO3

38

195

Salt

AT3G02480

 

1

2

 

AT1G52690

LEA7

2

1

 

AT5G59220

HAI7

4

4

 

AT5G06760

AtLEA4-5

6

11

 

AT1G43160

RAP2.6

10

12

 

AT4G05100

AtMYB74

18

50

 

AT1G54100

ALDH7B4

21

62

 

AT5G57050

ABI2

23

77

 

AT5G13330

Rap2.6L

26

36

 

AT1G52890

NAC019

28

15

 

AT3G04070

NAC047

29

73

 

AT3G48520

CYP94B3

31

27

 

AT4G19230

CYP707A1

33

75

 

AT1G07430

HAI2

36

16

Drought

AT2G46680

ATHB-7

3

1

 

AT1G52890

NAC019

4

15

 

AT3G03470

CYP89A9

11

271

 

AT2G18050

HIS1-3

12

21

 

AT1G29440

SAUR63

13

53

 

AT4G22950

AGL109

21

2002

 

AT4G32940

GAMMA-VPE

23

426

 

AT1G18650

PDCB3

25

778

 

AT1G56600

GolS2

31

33

 

AT2G21650

MEE3

38

855

 

AT4G30610

BRS1

39

468

  1. The 44 known biomarker genes with high EST profiles are collected. In comparison of our method (StressGenePred) with Fisher method, 30 of 44 known biomarker genes (bold) are ranked higher in the result of our method than the Fisher method
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BMC Genomics

ISSN: 1471-2164

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