Table 1 Average cosine similarity (COS) and Pearson correlation coefficient (PCC) of spectra from the same peptide in training and independent test sets with charge 2+ and charge 3+
From: MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks
Length | Charge 2+ | Charge 3+ | ||
|---|---|---|---|---|
COS | PCC | COS | PCC | |
9 | 0.800 | 0.757 | 0.617 | 0.553 |
10 | 0.770 | 0.724 | 0.781 | 0.734 |
11 | 0.760 | 0.713 | 0.771 | 0.721 |
12 | 0.735 | 0.688 | 0.735 | 0.682 |
13 | 0.704 | 0.655 | 0.732 | 0.681 |
14 | 0.703 | 0.658 | 0.703 | 0.650 |
15 | 0.687 | 0.643 | 0.672 | 0.617 |
16 | 0.694 | 0.652 | 0.691 | 0.641 |
17 | 0.645 | 0.601 | 0.690 | 0.641 |
18 | 0.646 | 0.606 | 0.660 | 0.612 |
19 | 0.636 | 0.595 | 0.668 | 0.622 |