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Table 2 Benchmark Instances from RNA PseudoBase

From: An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

ID

RNA Abbreviation

PKB Number

RNA Type

Length (nt.)

Known bps

1

Mengo_PKB

PKB295

Viral 5 UTR

24

7

2

T4_gene32

PKB74

mRNA

28

11

3

HAV_PK1

PKB297

Viral 5 UTR

33

12

4

TEV_PK1

PKB277

Viral 5 UTR

35

11

5

IPCV1

PKB35

Viral tRNA-like

40

8

6

ScYLV

PKB281

Viral Frameshift

42

8

7

Ec_PK3

PKB51

tmRNA

46

14

8

Ec_PK4

PKB52

tmRNA

52

19

9

BEV

PKB128

Viral Frameshift

59

16

10

BaEV

PKB98

Viral Readthrough

62

15

11

VMV

PKB280

Viral Frameshift

68

14

12

ALFV

PKB350

Viral Frameshift

77

17

13

MVEV

PKB349

Viral Frameshift

80

18

14

SARS-CoV

PKB254

Viral Frameshift

82

26

15

FCiLV3

PKB395

Viral tRNA-like

109

37

16

BBMV3

PKB135

Viral tRNA-like

116

39

17

CVV3

PKB389

Viral tRNA-like

129

37

18

CCMV3

PKB136

Viral tRNA-like

134

45