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Table 5 Specificity Comparison Results

From: An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

ID

#BP

Specificity (%)

1

2

3

4

5

6

7

PRSA

1

7

50.0

100.0

60.0

60.0

60.0

60.0

#

100.0

2

11

87.5

100.0

100.0

100.0

87.5

100.0

100.0

100.0

3

12

100.0

85.7

100.0

100.0

100.0

85.7

91.7

85.7

4

11

62.5

100.0

28.6

62.5

62.5

62.5

#

100.0

5

8

55.6

55.6

55.6

55.6

55.6

80.0

55.6

100.0

6

8

71.4

88.9

77.8

62.5

71.4

72.7

#

88.9

7

14

87.5

100.0

76.9

90.0

90.0

90.0

100.0

92.9

8

19

100.0

66.7

100.0

100.0

100.0

100.0

100.0

100.0

9

16

68.8

100.0

81.3

64.7

64.7

64.7

66.7

76.2

10

15

0.0

81.3

0.0

0.0

0.0

31.6

65.2

70.0

11

14

43.8

73.7

38.9

41.2

41.2

70.0

65.0

70.0

12

17

47.8

73.9

45.8

45.8

44.0

70.8

70.8

70.8

13

18

50.0

72.0

44.0

47.8

47.8

72.0

75.0

72.0

14

26

89.5

72.0

78.3

85.7

78.3

73.1

46.9

100.0

15

37

85.7

94.7

73.5

90.9

54.5

#

82.9

97.4

16

39

81.6

86.8

75.0

82.1

73.5

#

73.7

82.1

17

37

82.5

88.2

100.0

86.8

89.2

#

61.4

81.8

18

45

83.7

66.7

88.4

86.4

75.6

#

71.1

76.7

Average

69.3

83.7

68.0

70.1

66.4

73.8

73.2

86.9

  1. The best Specificity values for each algorithm are shown in boldface