Comparative genomics of Mycoplasma pneumoniae isolated from children with pneumonia: South Korea, 2010–2016

Lee, Joon Kee; Seong, Moon-Woo; Shin, Dongjin; Kim, Jong-Il; Han, Mi Seon; Yeon, Youbin; Cho, Sung Im; Park, Sung Sup; Choi, Eun Hwa

doi:10.1186/s12864-019-6306-9

BMC Genomics

Table 1 Genome lengths and contigs determined from the initial assembly with complete genome structures annotated by RAST

From: Comparative genomics of Mycoplasma pneumoniae isolated from children with pneumonia: South Korea, 2010–2016

Strain	Contigs	L50	N50	Min Length	Max Length	Total Length	%GC	Genes
Strain	Contigs	L50	N50	Min Length	Max Length	Total Length	%GC	CDS	RNA	Total
10–980	6	2	152,732	14,538	390,907	816,424	40.0	776	40	816
10–1048	6	2	152,735	14,538	392,185	816,465	40.0	777	40	817
10–1059	7	2	98,837	14,538	392,164	816,681	40.0	776	40	816
10–1110	8	2	152,733	20,993	388,970	816,522	40.0	775	40	815
10–1213	5	1	451,397	14,538	451,397	816,521	40.0	772	40	812
10–1257	3	1	702,439	14,562	702,439	816,333	40.0	776	40	816
10–1385	9	3	95,255	14,577	297,117	817,191	40.0	780	39	819
11–107	5	2	249,794	14,538	389,683	816,346	40.0	773	40	813
11–129	6	2	152,693	14,538	392,172	816,432	40.0	775	40	815
11–174	6	2	258,682	13,367	282,196	815,686	40.0	776	39	815
11–212	7	2	152,734	14,538	389,655	816,503	40.0	778	40	818
11–473	6	2	152,734	14,538	389,647	816,518	40.0	778	40	818
11–634	7	2	152,735	14,775	391,525	816,551	40.0	777	40	817
11–949	6	2	258,658	13,367	283,608	817,102	40.0	784	39	823
11–994	5	2	249,776	14,538	389,685	816,304	40.0	776	40	816
11–1384	6	2	258,694	13,367	283,575	818,669	40.0	787	39	826
12–060	6	2	152,734	14,538	392,205	816,506	40.0	775	40	815
12–091	6	2	152,734	14,538	391,968	816,510	40.0	777	40	817
14–637	6	2	156,124	60,136	298,090	818,560	40.0	789	39	828
15–215	6	2	152,734	14,561	392,183	816,388	40.0	775	40	815
15–885	6	2	152,734	14,561	389,671	816,420	40.0	776	40	816
15–969	6	2	152,735	14,538	392,144	816,389	40.0	780	40	820
15–982	5	2	156,554	14,538	390,947	816,495	40.0	769	40	809
16–002	6	2	152,736	14,538	389,658	816,530	40.0	773	40	813
16–004	6	2	152,736	14,538	392,133	816,561	40.0	777	40	817
16–032	6	2	152,734	14,538	392,119	816,471	40.0	772	40	812
16–118	5	1	443,549	14,538	443,549	816,467	40.0	775	40	815
16–462	5	2	152,735	57,889	392,162	816,525	40.0	776	40	816
16–710	7	2	152,734	14,538	392,162	816,537	40.0	773	40	813
16–734	6	2	258,694	13,367	283,522	818,445	40.0	784	39	823

L50, smallest number of contigs whose length sum makes up half of genome size; N50, sequence length of the shortest contig at 50% of the total genome length; CDS, coding sequence

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ISSN: 1471-2164

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