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Table 3 Compression ratio on the Oryza sativa Ldataset-2818(1012 GB)

From: Sketch distance-based clustering of chromosomes for large genome database compression

Reference

Compression ratio with algorithm

 

HiRGC

iDoComp

GDC2

B035

79.31

77.62

529.40

CX319

73.76

81.55

537.09

IRIS_313-10010

69.93

64.74

519.43

IRIS_313-10776

70.97

77.10

533.81

IRIS_313-9937

71.39

66.42

535.31

Result of ECC

92.10

103.52

550.77

Ratio gain*

13.89%

21.22%

2.48%

  1. Bold text indicates the highest compression ratio of an algorithm, italic text indicates the best case of fixed single reference compression result
  2. *The ratio gain of ECC against the best case
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BMC Genomics

ISSN: 1471-2164

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