Sketch distance-based clustering of chromosomes for large genome database compression

BMC Genomics

Table 5 Compression time of each algorithm on the three datasets

Algorithm	Compression time (in hours) for
	dataset-60		dataset-1152		datset-2818
	reference-fixed	ECC	reference-fixed	ECC	reference-fixed	ECC
HiRGC	1.18	0.98	15.12	13.94	2.91	2.82
iDoComp	6.54	2.82	102.94	29.77	15.58	10.34
GDC2	110.73	117.82	129.24	126.43	25.29	23.61

The time by the reference-fixed approach is the average running time of several fixed single-reference cases by each algorithm, please see the supplementary file for the time range of all the cases and compression time by ERGC, SCCG and NRGC

ISSN: 1471-2164