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Table 3 Characteristics1 of RNA sequencing reads of the layer intestine (n = 4)

From: Transcriptome analysis reveals mechanism underlying the differential intestinal functionality of laying hens in the late phase and peak phase of production

Samples2GC contents (%)Q30
(%)
Total readsMapped readsMapping
ratio
Unique mapping ratio
PP150.6792.8858,014,47652,888,43291.16%87.47%
PP250.0692.4950,793,75246,281,63891.12%87.63%
PP 350.3792.8956,232,77250,630,63190.04%86..52%
PP450.8793.1946,453,74836,633,80278.86%75.66%
LP149.8592.3549,218,91644,799,52191.02%87.79%
LP249.9493.4063,324,84058,066,09991.70%88.36%
LP349.2892.0440,910,97636,615,17289.50%86.26%
LP450.1693.3543,921,96240,084,92791.26%87.70%
  1. 1GC guanine-cytosine, Q30 the proportion of bases with a Phred quality score greater than 30
  2. 2PP laying hens in the peak phase of production, LP laying hens in the late phase of production